View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4602_high_3 (Length: 529)
Name: NF4602_high_3
Description: NF4602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4602_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 444; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 17 - 493
Target Start/End: Original strand, 30994505 - 30994981
Alignment:
| Q |
17 |
caaggtacaatgttaatgaccgaaaaaagcttctaccaaaggaagaaacaaaatacgagttaaagaaaggaggagtaataaagatgcggaattgtgcaat |
116 |
Q |
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| T |
30994505 |
caaggtacaatgttaatgaccgaaaaaagcttctaccaaaggaagaaacaaaatacgagttaaagaaaggaggagtaataaagatgcggaattgtgcaat |
30994604 |
T |
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| Q |
117 |
acaaatgttatacgtaaagagaataatactttttacgaatgattgatgtttaaaagacagatgaatcatatctcaaccaactcgtatattgaatttatag |
216 |
Q |
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| T |
30994605 |
acaaatgttatacgtaaagagaataatactttttacgaatgattgatgtttaaaagacagatgaatcatatctcaaccaactcgtatattgaatttatag |
30994704 |
T |
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| Q |
217 |
acgacaagtttttagtgtaatatga---tataatccaataaagattggagggaagaaggagtgaaagtcaaagaaataaagagggaggttcaaacattga |
313 |
Q |
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| T |
30994705 |
acgacaagtttttagtgtaatatgatactataatccaataaagattggagg---gaaggaatgaaagtcaaagaaataaagagggaggttcaaacattga |
30994801 |
T |
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| Q |
314 |
ctttagaatttcattcagctcaaataaactcttcgaatactcccgattattgtctttttagggttcacctatttttagaaactctcattcgccgattttc |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30994802 |
ctttagaatttcattcagctcaaataaactcttcgaatactcccgattattgtctttttagggttcacctatttttagaaactctcattcgccgattttc |
30994901 |
T |
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| Q |
414 |
attcttgacttctcacaaggtatgtatgtatattcattacacttttttcctttgaatttgttttgcggtgattaacttgc |
493 |
Q |
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| T |
30994902 |
attcttgacttctcacaaggtatgtatgtatattcattacactttttttctttgaatttgttttgcggtgattaacttgc |
30994981 |
T |
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