View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4602_high_4 (Length: 497)
Name: NF4602_high_4
Description: NF4602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4602_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 28 - 483
Target Start/End: Original strand, 51430229 - 51430657
Alignment:
| Q |
28 |
gtaaatatggcatcatctttataaatatggaatcatgtgcagctagtgatactgaatttggattgccaaacagnnnnnnnnnnnnnnnnnnnnnncttct |
127 |
Q |
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| T |
51430229 |
gtaaatatggcatcatctttataaatatggaatcatttgcagctagtgatactgaatttggattgcgaaacagtttttttttttt----------cttct |
51430318 |
T |
|
| Q |
128 |
caaaaatagttttaaaagctgattttcaattgagtatataaaaactacaaaacaagatcaaatcaaacgggccctttcaacacatggatgttaaaatagg |
227 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
51430319 |
taaaaatagttttaaaagctgattttcaattgagtatataaaaactacaaaacaagatcaaatcaaacaggccctttcaacacatggatgttaaaatagg |
51430418 |
T |
|
| Q |
228 |
aacaataaatgtaaatgattgattgcaacatgtaataaacttaaac-ggcaccaacacactcttatttcttactcacaaactcataatcccaaacaaaca |
326 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| |
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| T |
51430419 |
aacaataaatgtaaatgattgattgcaacatgtaataaacttaaactggcaccaacacactcttatttcttactc------------------acaaaca |
51430500 |
T |
|
| Q |
327 |
tgtacaagtaaaataatctcaatctataactaataatttgaaaagaaataaataaattcaaagcacaaacttcaaaagatgagnnnnnnnntacctgcac |
426 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| |
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| T |
51430501 |
tgtacaagtaaaataatctcaatttataactaataatttgaaaagaaataaataaattcaaagaacaaacttcaaaagatgaggaaaaaaatacctgcac |
51430600 |
T |
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| Q |
427 |
ggtaaccctcttctcattgtaaacagcttctccaggaacaagattcttagtgacaag |
483 |
Q |
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| T |
51430601 |
ggtaaccctcttctcattgtaaacagcttctccaggaacaagattcttagtgacaag |
51430657 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 418 - 483
Target Start/End: Complemental strand, 17128531 - 17128466
Alignment:
| Q |
418 |
tacctgcacggtaaccctcttctcattgtaaacagcttctccaggaacaagattcttagtgacaag |
483 |
Q |
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| T |
17128531 |
tacctgcacagaaactctcttctcattataaacagcctcaccaggaacaagattcttagtaacaag |
17128466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 124 - 203
Target Start/End: Original strand, 27750074 - 27750154
Alignment:
| Q |
124 |
ttctcaaaaatagtttta-aaagctgattttcaattgagtatataaaaactacaaaacaagatcaaatcaaacgggccctt |
203 |
Q |
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|||| |||||||||||| ||| ||||||||||||||||||| ||||||||| ||| ||| | | |||||||| ||||||| |
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| T |
27750074 |
ttcttaaaaatagttttttaaaactgattttcaattgagtatttaaaaactaaaaatcaaaacccaatcaaacaggccctt |
27750154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 137 - 203
Target Start/End: Complemental strand, 33092587 - 33092522
Alignment:
| Q |
137 |
ttttaaaagctgattttcaattgagtatataaaaactacaaaacaagatcaaatcaaacgggccctt |
203 |
Q |
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| T |
33092587 |
ttttaaaa-ctgattttcaattgagtatttaaaaactaaaaatcaaaacccaatcaaacaggccctt |
33092522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 124 - 203
Target Start/End: Complemental strand, 23495900 - 23495820
Alignment:
| Q |
124 |
ttctcaaaaatagtt-ttaaaagctgattttcaattgagtatataaaaactacaaaacaagatcaaatcaaacgggccctt |
203 |
Q |
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|||| |||||||||| || ||| ||||||||||||||||||| ||||||||| ||| ||| | |||||||| ||||||| |
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| T |
23495900 |
ttcttaaaaatagttcttgaaaactgattttcaattgagtatttaaaaactaaaaatcaaaactcaatcaaacaggccctt |
23495820 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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