View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4602_high_6 (Length: 386)
Name: NF4602_high_6
Description: NF4602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4602_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 182; Significance: 3e-98; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 14 - 221
Target Start/End: Complemental strand, 24567706 - 24567502
Alignment:
| Q |
14 |
atcaactaaaatttggcaggtatttgaaattgtttatttatgtacttcttctattgtcaattttcattgttggtatgtcataaaattgttatagtagtat |
113 |
Q |
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| T |
24567706 |
atcaactaaaatttggcaggtatttgaaattgtttatttatgtacttct---attgtcaattttcattgttggtatgttataaaattgttatagtagtag |
24567610 |
T |
|
| Q |
114 |
tatactatattagtagtctttttgtttagattcttgtaatgattcatctcctagggtttgtccaaggtttctaaattttaatcacttattagcgcggttc |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
24567609 |
tatactatattagtagtctttttgtttagattcttgtaatgattcatctcctagggtttgtccaaggtttctaaattttaatcacttattagcgcgcttc |
24567510 |
T |
|
| Q |
214 |
atgttttc |
221 |
Q |
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|||||||| |
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| T |
24567509 |
atgttttc |
24567502 |
T |
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