View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4602_low_11 (Length: 347)

Name: NF4602_low_11
Description: NF4602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4602_low_11
NF4602_low_11
[»] chr5 (18 HSPs)
chr5 (80-234)||(40335843-40335997)
chr5 (117-229)||(40378347-40378459)
chr5 (20-79)||(40335565-40335624)
chr5 (287-337)||(40378614-40378664)
chr5 (138-200)||(12975326-12975387)
chr5 (141-229)||(34117569-34117654)
chr5 (147-227)||(2568608-2568689)
chr5 (147-227)||(14295457-14295537)
chr5 (148-203)||(36325986-36326041)
chr5 (136-178)||(30217082-30217124)
chr5 (172-217)||(7470592-7470636)
chr5 (137-229)||(18875310-18875402)
chr5 (136-193)||(18902781-18902837)
chr5 (96-227)||(9202733-9202867)
chr5 (157-229)||(18704085-18704156)
chr5 (147-203)||(18857439-18857494)
chr5 (136-216)||(26390818-26390897)
chr5 (89-191)||(41957430-41957534)
[»] chr6 (8 HSPs)
chr6 (136-227)||(33787773-33787864)
chr6 (136-224)||(24838771-24838859)
chr6 (136-227)||(24782010-24782101)
chr6 (96-229)||(6647338-6647471)
chr6 (157-227)||(4006665-4006735)
chr6 (136-219)||(281876-281959)
chr6 (136-215)||(10154184-10154263)
chr6 (160-227)||(29274281-29274348)
[»] chr4 (15 HSPs)
chr4 (136-228)||(18628571-18628663)
chr4 (136-229)||(30207599-30207691)
chr4 (147-219)||(2996532-2996604)
chr4 (116-227)||(17884019-17884131)
chr4 (136-229)||(49219088-49219181)
chr4 (80-191)||(23819076-23819189)
chr4 (184-227)||(34368828-34368872)
chr4 (136-227)||(52735073-52735164)
chr4 (147-219)||(10192243-10192315)
chr4 (139-227)||(54325068-54325156)
chr4 (136-185)||(56480341-56480390)
chr4 (139-191)||(1408327-1408379)
chr4 (157-216)||(3175913-3175972)
chr4 (116-227)||(43824235-43824346)
chr4 (140-219)||(49085948-49086027)
[»] chr1 (8 HSPs)
chr1 (157-229)||(49517019-49517091)
chr1 (136-227)||(7472263-7472353)
chr1 (148-203)||(25006074-25006128)
chr1 (155-213)||(6231863-6231921)
chr1 (80-185)||(35590863-35590969)
chr1 (147-215)||(4548684-4548752)
chr1 (127-191)||(4549561-4549625)
chr1 (142-229)||(7273973-7274060)
[»] chr7 (13 HSPs)
chr7 (136-227)||(30456478-30456569)
chr7 (118-191)||(6263373-6263446)
chr7 (127-225)||(28165044-28165142)
chr7 (136-218)||(38010674-38010756)
chr7 (141-191)||(18350740-18350790)
chr7 (150-227)||(27548214-27548291)
chr7 (157-203)||(44821935-44821980)
chr7 (147-219)||(1417223-1417295)
chr7 (171-227)||(35536058-35536114)
chr7 (136-219)||(22759145-22759228)
chr7 (136-227)||(27481322-27481413)
chr7 (178-229)||(39591537-39591588)
chr7 (148-227)||(47177587-47177666)
[»] chr8 (13 HSPs)
chr8 (136-191)||(9836882-9836937)
chr8 (136-191)||(11795079-11795134)
chr8 (136-185)||(8062322-8062371)
chr8 (142-226)||(8823427-8823511)
chr8 (159-218)||(4510988-4511047)
chr8 (136-203)||(6509331-6509397)
chr8 (89-178)||(11569436-11569527)
chr8 (136-191)||(28769367-28769422)
chr8 (160-229)||(12361141-12361210)
chr8 (136-208)||(8062495-8062566)
chr8 (136-215)||(31705047-31705127)
chr8 (136-219)||(34551079-34551162)
chr8 (141-185)||(41470344-41470388)
[»] chr2 (12 HSPs)
chr2 (139-229)||(10143121-10143211)
chr2 (127-191)||(35099618-35099682)
chr2 (148-218)||(11513858-11513928)
chr2 (148-191)||(18066115-18066158)
chr2 (148-191)||(18179280-18179323)
chr2 (136-218)||(22681213-22681295)
chr2 (136-178)||(11488277-11488319)
chr2 (157-191)||(15377752-15377786)
chr2 (136-227)||(656805-656896)
chr2 (148-192)||(16353847-16353891)
chr2 (136-219)||(18962066-18962149)
chr2 (127-191)||(43205296-43205360)
[»] chr3 (8 HSPs)
chr3 (80-203)||(37273107-37273234)
chr3 (104-185)||(39602204-39602287)
chr3 (138-219)||(1125796-1125878)
chr3 (137-214)||(2201092-2201169)
chr3 (158-219)||(23530234-23530296)
chr3 (136-186)||(24158531-24158581)
chr3 (140-227)||(24887315-24887402)
chr3 (147-191)||(52618990-52619034)


Alignment Details
Target: chr5 (Bit Score: 111; Significance: 6e-56; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 80 - 234
Target Start/End: Original strand, 40335843 - 40335997
Alignment:
Q  80 ctgttcggtagagtttatggaaagagcttatgacatttcataagttgtttcaacaaatttccataatctctccaagttagcttatgaaagcagcttataa 179  Q
    ||||| ||||||||||||||||||||||| |||| ||||||||||||||||| ||||||||||||| || |||||| |||||||||||||||||||||||    
T  40335843 ctgtttggtagagtttatggaaagagcttgtgacttttcataagttgtttcagcaaatttccataagctttccaagatagcttatgaaagcagcttataa 40335942  T
Q  180 cttatatgaaaaacaatttgacttgttttatcttttgttaaagaaataacctacg 234  Q
    |||||||||||||||||||| ||| ||||||||||||| ||||||||||| ||||    
T  40335943 cttatatgaaaaacaatttggcttattttatcttttgtcaaagaaataacatacg 40335997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 117 - 229
Target Start/End: Original strand, 40378347 - 40378459
Alignment:
Q  117 tcataagttgtttcaacaaatttccataatctctccaagttagcttatgaaagcagcttataacttatatgaaaaacaatttgacttgttttatcttttg 216  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| ||| |||| |||||||||||||| |    
T  40378347 tcataagttgtttcaacaaatttccataatctctccaagttagtttatgatagcagcttataacttatatgaaatacagtttggcttgttttatctttcg 40378446  T
Q  217 ttaaagaaataac 229  Q
    ||||||| |||||    
T  40378447 ttaaagagataac 40378459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 20 - 79
Target Start/End: Original strand, 40335565 - 40335624
Alignment:
Q  20 tccatgactgccatcatatcatccattgcaccttggtgagccttgttactattataccac 79  Q
    |||||||||| |||||||||||||  ||||||||||||||||||||||||||||||||||    
T  40335565 tccatgactgtcatcatatcatcccctgcaccttggtgagccttgttactattataccac 40335624  T

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Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 287 - 337
Target Start/End: Original strand, 40378614 - 40378664
Alignment:
Q  287 ttggacatataatgtcgtattttgttcttttgtttgtatcttgttcctttg 337  Q
    ||||||||||||||| ||||||||||||||||||||||||||||| |||||    
T  40378614 ttggacatataatgttgtattttgttcttttgtttgtatcttgttactttg 40378664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 138 - 200
Target Start/End: Complemental strand, 12975387 - 12975326
Alignment:
Q  138 ttccataatctctccaagttagcttatgaaagcagcttataacttatatgaaaaacaatttga 200  Q
    |||||||| ||||||||| |||||||||||  ||||||||| |||||||| ||||||||||||    
T  12975387 ttccataagctctccaagatagcttatgaacacagcttatagcttatatg-aaaacaatttga 12975326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 141 - 229
Target Start/End: Original strand, 34117569 - 34117654
Alignment:
Q  141 cataatctctccaagttagcttatgaaagcagcttataacttatatgaaaaacaatttgacttgttttatcttttgttaaagaaataac 229  Q
    ||||| ||||||||| ||||||||||||||| |||||| |||||||| |||  |   |  ||| |||||||||||||||||||||||||    
T  34117569 cataagctctccaagatagcttatgaaagcaacttatagcttatatgtaaataa---taccttattttatcttttgttaaagaaataac 34117654  T

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Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 147 - 227
Target Start/End: Complemental strand, 2568689 - 2568608
Alignment:
Q  147 ctctccaagttagcttatgaaagcagcttataacttatatgaaaaacaatttgac-ttgttttatcttttgttaaagaaata 227  Q
    ||||||| | |||||||||||| || |||||| |||||| |||||||||||| || ||||||||| | |||||| |||||||    
T  2568689 ctctccatgatagcttatgaaaacaacttatagcttatacgaaaaacaatttaactttgttttatatcttgttatagaaata 2568608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 147 - 227
Target Start/End: Complemental strand, 14295537 - 14295457
Alignment:
Q  147 ctctccaagttagcttatgaaagcagcttataacttatatgaaaaacaatttgac-ttgttttatcttttgttaaagaaata 227  Q
    ||||||| | ||||||| |||| ||||||||| |||||||| |||||| |||||| || ||||||||||||||| |||||||    
T  14295537 ctctccaggatagcttacgaaaacagcttatagcttatatg-aaaacagtttgactttattttatcttttgttatagaaata 14295457  T

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Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 148 - 203
Target Start/End: Complemental strand, 36326041 - 36325986
Alignment:
Q  148 tctccaagttagcttatgaaagcagcttataacttatatgaaaaacaatttgactt 203  Q
    |||||||| ||||||| ||||||| |||||||||||||  |||||||| |||||||    
T  36326041 tctccaagatagcttacgaaagcaacttataacttatacaaaaaacaaattgactt 36325986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 136 - 178
Target Start/End: Complemental strand, 30217124 - 30217082
Alignment:
Q  136 atttccataatctctccaagttagcttatgaaagcagcttata 178  Q
    |||||||||| ||||||| | ||||||||||||||||||||||    
T  30217124 atttccataagctctccaggatagcttatgaaagcagcttata 30217082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 172 - 217
Target Start/End: Original strand, 7470592 - 7470636
Alignment:
Q  172 gcttataacttatatgaaaaacaatttgacttgttttatcttttgt 217  Q
    ||||||||||||||||||||  |||||||||| |||||||||||||    
T  7470592 gcttataacttatatgaaaat-aatttgactttttttatcttttgt 7470636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 137 - 229
Target Start/End: Complemental strand, 18875402 - 18875310
Alignment:
Q  137 tttccataatctctccaagttagcttatgaaagcagcttataacttatatgaaaaacaatttgac-ttgttttatcttttgttaaagaaataac 229  Q
    ||||||||| ||||||| | || ||||| ||| ||||||||||||| |||| ||| ||||||||| || |||| ||||||| || |||||||||    
T  18875402 tttccataagctctccaggatatcttattaaaacagcttataacttgtatg-aaatcaatttgactttattttgtcttttgatatagaaataac 18875310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 193
Target Start/End: Complemental strand, 18902837 - 18902781
Alignment:
Q  136 atttccataatctctccaagttagcttatgaaagcagcttataacttatatgaaaaac 193  Q
    |||||||||| ||| ||||  ||||||||||| |||||||||| ||||||||||||||    
T  18902837 atttccataagctccccaaaatagcttatgaa-gcagcttatagcttatatgaaaaac 18902781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 96 - 227
Target Start/End: Original strand, 9202733 - 9202867
Alignment:
Q  96 atggaaagagcttatgacatt--tcataagttgtttcaa-caaatttccataatctctccaagttagcttatgaaagcagcttataacttatatgaaaaa 192  Q
    ||||||| |||||||||||||  ||||||| |||||| | |  |||| |||||  ||| |||| || ||||||||| ||||||||  |||||||| ||||    
T  9202733 atggaaacagcttatgacattgttcataagctgtttccagcttattttcataagttcttcaagataacttatgaaaacagcttattgcttatatg-aaaa 9202831  T
Q  193 caatttgac-ttgttttatcttttgttaaagaaata 227  Q
    |||||| || || |||||||||||| || |||||||    
T  9202832 caatttaactttattttatcttttgctacagaaata 9202867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 157 - 229
Target Start/End: Original strand, 18704085 - 18704156
Alignment:
Q  157 tagcttatgaaagcagcttataacttatatgaaaaacaatttgacttgttttatcttttgttaaagaaataac 229  Q
    |||||||||||| || |||||| ||||||| ||||| |  |||||||  |||||||||||||| |||||||||    
T  18704085 tagcttatgaaaacaacttatagcttatat-aaaaatagcttgactttatttatcttttgttatagaaataac 18704156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 147 - 203
Target Start/End: Original strand, 18857439 - 18857494
Alignment:
Q  147 ctctccaagttagcttatgaaagcagcttataacttatatgaaaaacaatttgactt 203  Q
    |||||||||  ||||||||||| |||||||||  ||||| |||||||||||||||||    
T  18857439 ctctccaagacagcttatgaaaacagcttatagattata-gaaaaacaatttgactt 18857494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 136 - 216
Target Start/End: Original strand, 26390818 - 26390897
Alignment:
Q  136 atttccataatctctccaagttagcttatgaaagcagcttataacttatatgaaaaacaatttgacttgttttatcttttg 216  Q
    |||||||||| ||||||| | || |||| |||| || |||||| |||||||| |||||| ||| |||| ||||||||||||    
T  26390818 atttccataagctctccaggataacttaggaaaccatcttatagcttatatg-aaaacagtttaacttattttatcttttg 26390897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 89 - 191
Target Start/End: Original strand, 41957430 - 41957534
Alignment:
Q  89 agagtttatggaaagagcttatgacatttc-ataagttgttt-caacaaatttccataatctctccaagttagcttatgaaagcagcttataacttatat 186  Q
    |||| ||| ||||| |||||||||||| || ||||||||||| || |  |||| |||||  |||| | | |||||||||||| |||||||||||||| ||    
T  41957430 agagcttacggaaacagcttatgacatgtccataagttgttttcatcttattttcataagttctcaaggatagcttatgaaaacagcttataacttacat 41957529  T
Q  187 gaaaa 191  Q
    |||||    
T  41957530 gaaaa 41957534  T

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Target: chr6 (Bit Score: 49; Significance: 6e-19; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 136 - 227
Target Start/End: Original strand, 33787773 - 33787864
Alignment:
Q  136 atttccataatctctccaagttagcttatgaaagcagcttataacttatatgaaaaacaatttgac-ttgttttatcttttgttaaagaaata 227  Q
    |||||||||| ||||||||| || ||||||||| |||||||||||||||||| ||| ||||||||| ||||||||| |||||||| |||||||    
T  33787773 atttccataagctctccaagataacttatgaaaacagcttataacttatatg-aaatcaatttgactttgttttatattttgttatagaaata 33787864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 136 - 224
Target Start/End: Original strand, 24838771 - 24838859
Alignment:
Q  136 atttccataatctctccaagttagcttatgaaagcagcttataacttatatgaaaaacaatttgac-ttgttttatcttttgttaaagaa 224  Q
    ||||| |||| ||||||| | |||||||||||| ||||||||| |||||||| |||| |||| | | |||||||||||||||||||||||    
T  24838771 atttctataagctctccatgatagcttatgaaatcagcttatagcttatatg-aaaataattagtctttgttttatcttttgttaaagaa 24838859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 136 - 227
Target Start/End: Complemental strand, 24782101 - 24782010
Alignment:
Q  136 atttccataatctctccaagttagcttatgaaagcagcttataacttatatgaaaaacaatttgacttg-ttttatcttttgttaaagaaata 227  Q
    |||| ||||| ||||| | | ||| |||| |||| ||||||||||||||||| |||||||||||| ||| ||||||||||||||| |||||||    
T  24782101 attttcataagctctcaaggatagtttattaaagtagcttataacttatatg-aaaacaatttgatttgattttatcttttgttatagaaata 24782010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 96 - 229
Target Start/End: Complemental strand, 6647471 - 6647338
Alignment:
Q  96 atggaaagagcttatgacat-ttcataagttgttt-caacaaatttccataatctctccaagttagcttatgaaagcagcttataacttatatgaaaaac 193  Q
    ||||||| |||||||||||| |||||||| ||||| ||||  |||| ||||| ||||| ||| |||||||||||| ||| ||||||| |||||  |||      
T  6647471 atggaaatagcttatgacatgttcataagatgttttcaacttattttcataagctctctaagatagcttatgaaaacagattataacctatat-taaagt 6647373  T
Q  194 aatttgacttgttttatcttttgttaaagaaataac 229  Q
    |||||||||| | |||| |||||||| |||||||||    
T  6647372 aatttgactt-tattattttttgttatagaaataac 6647338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 157 - 227
Target Start/End: Complemental strand, 4006735 - 4006665
Alignment:
Q  157 tagcttatgaaagcagcttataacttatatgaaaaacaatttgac-ttgttttatcttttgttaaagaaata 227  Q
    |||||||||||| || |||||| ||||||| |||||||||||||| || ||||||| ||||||| |||||||    
T  4006735 tagcttatgaaaacaacttatagcttatat-aaaaacaatttgactttattttatcatttgttatagaaata 4006665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 136 - 219
Target Start/End: Original strand, 281876 - 281959
Alignment:
Q  136 atttccataatctctccaagttagcttatgaaagcagcttataacttatatgaaaaacaatttgac-ttgttttatcttttgtta 219  Q
    |||||||| | ||||| | | |||||||||||  ||||||||| |||||||| ||||||| ||||| || |||||||||||||||    
T  281876 atttccatgagctctctaggatagcttatgaacacagcttatagcttatatg-aaaacaagttgactttattttatcttttgtta 281959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 136 - 215
Target Start/End: Complemental strand, 10154263 - 10154184
Alignment:
Q  136 atttccataatctctccaagttagcttatgaaagcagcttataacttatatgaaaaacaatttgac-ttgttttatctttt 215  Q
    |||||||||| || | || | |||| |||||||| ||||||||||||||||| |||||| |||||| || |||||||||||    
T  10154263 atttccataagcttttcatgctagcctatgaaagtagcttataacttatatg-aaaacagtttgactttattttatctttt 10154184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 160 - 227
Target Start/End: Original strand, 29274281 - 29274348
Alignment:
Q  160 cttatgaaagcagcttataacttatatgaaaaacaatttgac-ttgttttatcttttgttaaagaaata 227  Q
    ||||||||| ||| ||||| |||||||| ||||||||||||| || |||||||||||| || |||||||    
T  29274281 cttatgaaaacagtttatagcttatatg-aaaacaatttgactttattttatcttttgctatagaaata 29274348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 136 - 228
Target Start/End: Original strand, 18628571 - 18628663
Alignment:
Q  136 atttccataatctctccaagttagcttatgaaagcagcttataacttatatgaaaaacaatttgact-tgttttatcttttgttaaagaaataa 228  Q
    |||||||||| ||||||||| || ||||||||| ||| ||||||||||||| ||||||| ||||||| | ||||  ||||||||||||||||||    
T  18628571 atttccataagctctccaagataacttatgaaaacagtttataacttatat-aaaaacagtttgactatatttttccttttgttaaagaaataa 18628663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 136 - 229
Target Start/End: Original strand, 30207599 - 30207691
Alignment:
Q  136 atttccataatctctccaagttagcttatgaaagcagcttataacttatatgaaaaacaatttgacttgttttatcttttgttaaagaaataac 229  Q
    |||||||||||||||| ||| |||||||||||| || |||||| |||||||| |||||| ||||| || |||||| |||||||| |||| ||||    
T  30207599 atttccataatctctctaaggtagcttatgaaaacaacttatagcttatatg-aaaacagtttgatttattttattttttgttatagaactaac 30207691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 147 - 219
Target Start/End: Complemental strand, 2996604 - 2996532
Alignment:
Q  147 ctctccaagttagcttatgaaagcagcttataacttatatgaaaaacaatttgact-tgttttatcttttgtta 219  Q
    ||||||||| |||||||||||| || |||||||||||||| ||||||||||||||| | ||||||||| |||||    
T  2996604 ctctccaagatagcttatgaaaacaacttataacttatat-aaaaacaatttgactgtattttatcttatgtta 2996532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 116 - 227
Target Start/End: Complemental strand, 17884131 - 17884019
Alignment:
Q  116 ttcataagttgttt-caacaaatttccataatctctccaagttagcttatgaaagcagcttataacttatatgaaaaacaatttgac-ttgttttatctt 213  Q
    |||||||||||||| || | ||||| ||||| ||||||||  |||||||||||| || || ||||||||||  ||||||||||| || || |||||||||    
T  17884131 ttcataagttgttttcagctaattttcataagctctccaatatagcttatgaaaacaactgataacttata-caaaaacaatttaactttattttatctt 17884033  T
Q  214 ttgttaaagaaata 227  Q
    |||||| |||||||    
T  17884032 ttgttatagaaata 17884019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 136 - 229
Target Start/End: Complemental strand, 49219181 - 49219088
Alignment:
Q  136 atttccataatctctccaagttagcttatgaaagcagcttataacttatatgaaaaacaatttgac-ttgttttatcttttgttaaagaaataac 229  Q
    |||||||||||||||  ||| ||| |||||||| || |||||| |||||||| |||| |||||||| || |||||| |||||||| |||||||||    
T  49219181 atttccataatctctttaagatagtttatgaaaacaacttatagcttatatg-aaaataatttgactttattttatattttgttatagaaataac 49219088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 80 - 191
Target Start/End: Complemental strand, 23819189 - 23819076
Alignment:
Q  80 ctgttcggtagagtttatggaaagagcttatgacatttc-ataagttgttt-caacaaatttccataatctctccaagttagcttatgaaagcagcttat 177  Q
    ||||| || |||||||| | ||| |||||||||||| || ||||||||||| || |  ||||| |||| |||| |||| |||||||||||| ||  ||||    
T  23819189 ctgtttggaagagtttaagaaaacagcttatgacatgtccataagttgttttcatcttatttctataagctcttcaagatagcttatgaaaacatgttat 23819090  T
Q  178 aacttatatgaaaa 191  Q
    ||||||||||||||    
T  23819089 aacttatatgaaaa 23819076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 184 - 227
Target Start/End: Complemental strand, 34368872 - 34368828
Alignment:
Q  184 tatgaaaaacaatttgactt-gttttatcttttgttaaagaaata 227  Q
    |||||||||||||||||||| |||||||||||||||| |||||||    
T  34368872 tatgaaaaacaatttgactttgttttatcttttgttatagaaata 34368828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 136 - 227
Target Start/End: Complemental strand, 52735164 - 52735073
Alignment:
Q  136 atttccataatctctccaagttagcttatgaaagcagcttataacttatatgaaaaacaatttgac-ttgttttatcttttgttaaagaaata 227  Q
    |||||||||| |||| |||| ||||||| |||| || | ||||||||||||| |||  |||||||| || ||||||||||||||| |||||||    
T  52735164 atttccataagctcttcaagatagcttacgaaaacaacatataacttatatg-aaagtaatttgactttattttatcttttgttacagaaata 52735073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 219
Target Start/End: Complemental strand, 10192315 - 10192243
Alignment:
Q  147 ctctccaagttagcttatgaaagcagcttataacttatatgaaaaacaatttgac-ttgttttatcttttgtta 219  Q
    ||||||| | |||||| ||||| || ||||||||||||||| ||||||||||||| || || ||||||||||||    
T  10192315 ctctccaggatagcttttgaaaacaacttataacttatatg-aaaacaatttgactttattctatcttttgtta 10192243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 227
Target Start/End: Original strand, 54325068 - 54325156
Alignment:
Q  139 tccataatctctccaagttagcttatgaaagcagcttataacttatatgaaaaacaatttgac-ttgttttatcttttgttaaagaaata 227  Q
    ||||||| ||||||| | |||||| |||||  |||||||| |||||||| |||||| |||||| || ||||||||||||| | |||||||    
T  54325068 tccataaactctccatgatagcttttgaaaatagcttatagcttatatg-aaaacagtttgactttattttatcttttgtaatagaaata 54325156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 185
Target Start/End: Complemental strand, 56480390 - 56480341
Alignment:
Q  136 atttccataatctctccaagttagcttatgaaagcagcttataacttata 185  Q
    |||| ||||| ||||||||| ||| |||||||| ||||||||||||||||    
T  56480390 attttcataagctctccaagatagtttatgaaaacagcttataacttata 56480341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 139 - 191
Target Start/End: Original strand, 1408327 - 1408379
Alignment:
Q  139 tccataatctctccaagttagcttatgaaagcagcttataacttatatgaaaa 191  Q
    ||||||| ||||| ||||||||||||||||||| ||||||  ||||| |||||    
T  1408327 tccataaactctcgaagttagcttatgaaagcaacttatagattatacgaaaa 1408379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 157 - 216
Target Start/End: Complemental strand, 3175972 - 3175913
Alignment:
Q  157 tagcttatgaaagcagcttataacttatatgaaaaacaatttgac-ttgttttatcttttg 216  Q
    |||||||||||| ||||||||||||||  || ||||||||||||| || ||||||||||||    
T  3175972 tagcttatgaaaacagcttataacttacttg-aaaacaatttgactttattttatcttttg 3175913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 116 - 227
Target Start/End: Complemental strand, 43824346 - 43824235
Alignment:
Q  116 ttcataagttgttt-caacaaatttccataatctctccaagttagcttatgaaagcagcttataacttatatgaaaaacaatttgacttgttttatcttt 214  Q
    |||||||||||||| || |  |||||||||| || |||| | || |||| ||||  ||||||||||||||||| |||| ||||||| ||   ||||||||    
T  43824346 ttcataagttgttttcagcttatttccataagctttccaggataacttacgaaaaaagcttataacttatatg-aaaagaatttgattttaattatcttt 43824248  T
Q  215 tgttaaagaaata 227  Q
    || ||||||||||    
T  43824247 tgctaaagaaata 43824235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 140 - 219
Target Start/End: Complemental strand, 49086027 - 49085948
Alignment:
Q  140 ccataatctctccaagttagcttatgaaagcagcttataacttatatgaaaaacaatttgac-ttgttttatcttttgtta 219  Q
    |||||| ||||| ||| |||||||||||| || |||||||||| |||| |||| | |||||| || |||||||||||||||    
T  49086027 ccataagctctctaaggtagcttatgaaaacaacttataacttgtatg-aaaatagtttgacattattttatcttttgtta 49085948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 157 - 229
Target Start/End: Complemental strand, 49517091 - 49517019
Alignment:
Q  157 tagcttatgaaagcagcttataacttatatgaaaaacaatttgac-ttgttttatcttttgttaaagaaataac 229  Q
    |||||||||||| ||||||||| |||| ||| ||||||||||||| || ||||||||||||||| |||||||||    
T  49517091 tagcttatgaaaacagcttatagcttaaatg-aaaacaatttgactttattttatcttttgttatagaaataac 49517019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 136 - 227
Target Start/End: Complemental strand, 7472353 - 7472263
Alignment:
Q  136 atttccataatctctccaagttagcttatgaaagcagcttataacttatatgaaaaacaatttgacttgttttatcttttgttaaagaaata 227  Q
    |||| ||||| ||||||||| ||||||||| || |||||||||  |||||  ||||||||||| |||| || |||||||||||| |||||||    
T  7472353 attttcataagctctccaagatagcttatggaaacagcttatagattatac-aaaaacaatttaacttattatatcttttgttatagaaata 7472263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 148 - 203
Target Start/End: Original strand, 25006074 - 25006128
Alignment:
Q  148 tctccaagttagcttatgaaagcagcttataacttatatgaaaaacaatttgactt 203  Q
    |||||||| |||||||||||| || |||||| |||||||| |||||||||||||||    
T  25006074 tctccaagatagcttatgaaaacaacttatagcttatatg-aaaacaatttgactt 25006128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 155 - 213
Target Start/End: Original strand, 6231863 - 6231921
Alignment:
Q  155 gttagcttatgaaagcagcttataacttatatgaaaaacaatttgacttgttttatctt 213  Q
    ||||||||| |||| |||||||||  |||||||||||||| ||||||||  ||||||||    
T  6231863 gttagcttacgaaaacagcttatagattatatgaaaaacagtttgactttatttatctt 6231921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 80 - 185
Target Start/End: Original strand, 35590863 - 35590969
Alignment:
Q  80 ctgttcggtagagtttatggaaagagcttatgacatttcataagttgttt-caacaaatttccataatctctccaagttagcttatgaaagcagcttata 178  Q
    ||||| ||||||| ||||||||| ||| |||| || ||||| |||||||| || |  |||||||||| ||||||| | |||||||||||| |  ||||||    
T  35590863 ctgtttggtagagcttatggaaacagcatatggcagttcatcagttgttttcagcttatttccataagctctccatgatagcttatgaaatcgacttata 35590962  T
Q  179 acttata 185  Q
     ||||||    
T  35590963 gcttata 35590969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 215
Target Start/End: Complemental strand, 4548752 - 4548684
Alignment:
Q  147 ctctccaagttagcttatgaaagcagcttataacttatatgaaaaacaatttgac-ttgttttatctttt 215  Q
    ||||||||| |||||||||||| |||||||| |||| ||| ||||||| |||||| || |||||||||||    
T  4548752 ctctccaagatagcttatgaaaacagcttatgacttgtat-aaaaacagtttgactttattttatctttt 4548684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 127 - 191
Target Start/End: Original strand, 4549561 - 4549625
Alignment:
Q  127 tttcaacaaatttccataatctctccaagttagcttatgaaagcagcttataacttatatgaaaa 191  Q
    |||||||||||||| |||| ||||||| | | |||||||||| || |||||| ||| ||||||||    
T  4549561 tttcaacaaatttcaataagctctccaggattgcttatgaaaacatcttatagcttgtatgaaaa 4549625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 142 - 229
Target Start/End: Original strand, 7273973 - 7274060
Alignment:
Q  142 ataatctctccaagttagcttatgaaagcagcttataacttatatgaaaaacaatttgac-ttgttttatcttttgttaaagaaataac 229  Q
    |||| |||| |||| ||| ||||| || ||||||||||||| |||| ||||||||||||| || ||| ||||||||||| | |||||||    
T  7273973 ataagctcttcaaggtagtttatggaaacagcttataacttgtatg-aaaacaatttgactttatttcatcttttgttataaaaataac 7274060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000008; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 136 - 227
Target Start/End: Original strand, 30456478 - 30456569
Alignment:
Q  136 atttccataatctctccaagttagcttatgaaagcagcttataacttatatgaaaaacaatttgac-ttgttttatcttttgttaaagaaata 227  Q
    |||| ||||| ||||||||| ||| |||||||| |  ||||||||||||||| ||||||||||||| || ||||||||||||||  |||||||    
T  30456478 attttcataagctctccaagatagtttatgaaaaccacttataacttatatg-aaaacaatttgactttattttatcttttgttttagaaata 30456569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 118 - 191
Target Start/End: Original strand, 6263373 - 6263446
Alignment:
Q  118 cataagttgtttcaacaaatttccataatctctccaagttagcttatgaaagcagcttataacttatatgaaaa 191  Q
    |||||||||||| | |  |||||||||  |||||||   |||||||||||| ||||||||||||||||||||||    
T  6263373 cataagttgttttagcttatttccatatgctctccataatagcttatgaaatcagcttataacttatatgaaaa 6263446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 127 - 225
Target Start/End: Complemental strand, 28165142 - 28165044
Alignment:
Q  127 tttcaacaaatttccataatctctccaagttagcttatgaaagcagcttataacttatatgaaaaacaatttgacttg-ttttatcttttgttaaagaaa 225  Q
    |||||||  |||||||||| ||||||| | |||||||| ||  ||| ||||| ||||||| |||| |||||||||||  ||||||||||||||| |||||    
T  28165142 tttcaacttatttccataagctctccatgatagcttataaagacagtttatagcttatattaaaa-caatttgacttcattttatcttttgttatagaaa 28165044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 136 - 218
Target Start/End: Complemental strand, 38010756 - 38010674
Alignment:
Q  136 atttccataatctctccaagttagcttatgaaagcagcttataacttatatgaaaaacaatttgac-ttgttttatcttttgtt 218  Q
    ||||||||||  |||| | | ||| |||||||| ||||||||| |||||||| ||||||||||| | |||||||||||||||||    
T  38010756 atttccataagttctctaggatagattatgaaaacagcttatagcttatatg-aaaacaatttggctttgttttatcttttgtt 38010674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 141 - 191
Target Start/End: Original strand, 18350740 - 18350790
Alignment:
Q  141 cataatctctccaagttagcttatgaaagcagcttataacttatatgaaaa 191  Q
    ||||| ||||||| | |||||||||||| |||||||||||||||| |||||    
T  18350740 cataagctctccatgatagcttatgaaaacagcttataacttatacgaaaa 18350790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 150 - 227
Target Start/End: Complemental strand, 27548291 - 27548214
Alignment:
Q  150 tccaagttagcttatgaaagcagcttataacttatatgaaaaacaatttgac-ttgttttatcttttgttaaagaaata 227  Q
    |||||| |||||||||||| ||||||||| |||| ||| ||||||||| ||| || |||||||||||| ||| ||||||    
T  27548291 tccaagatagcttatgaaaacagcttatagcttaaatg-aaaacaattagactttattttatcttttgctaaggaaata 27548214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 157 - 203
Target Start/End: Complemental strand, 44821980 - 44821935
Alignment:
Q  157 tagcttatgaaagcagcttataacttatatgaaaaacaatttgactt 203  Q
    |||||||||||| ||||||||||||||||  ||||||||||||||||    
T  44821980 tagcttatgaaaacagcttataacttata-caaaaacaatttgactt 44821935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 219
Target Start/End: Complemental strand, 1417295 - 1417223
Alignment:
Q  147 ctctccaagttagcttatgaaagcagcttataacttatatgaaaaacaatttgac-ttgttttatcttttgtta 219  Q
    ||||||| | |||||||||||| || |||||  |||||||| ||||||||||||| || |||||||||||||||    
T  1417295 ctctccatgctagcttatgaaaacaacttattgcttatatg-aaaacaatttgactttattttatcttttgtta 1417223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 227
Target Start/End: Complemental strand, 35536114 - 35536058
Alignment:
Q  171 agcttataacttatatgaaaaacaatttgac-ttgttttatcttttgttaaagaaata 227  Q
    ||||||||||||||||| ||||||||||||| || ||||||||| ||||| |||||||    
T  35536114 agcttataacttatatg-aaaacaatttgactttattttatcttatgttatagaaata 35536058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 136 - 219
Target Start/End: Complemental strand, 22759228 - 22759145
Alignment:
Q  136 atttccataatctctccaagttagcttatgaaagcagcttataacttatatgaaaaacaatttgac-ttgttttatcttttgtta 219  Q
    |||||||||| ||||||  | |||||||||||| |||||| || |||||||| ||||||||||  | || |||||||||||||||    
T  22759228 atttccataagctctcctggatagcttatgaaatcagcttttagcttatatg-aaaacaattttcctttattttatcttttgtta 22759145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 136 - 227
Target Start/End: Original strand, 27481322 - 27481413
Alignment:
Q  136 atttccataatctctccaagttagcttatgaaagcagcttataacttatatgaaaaacaatttgactt-gttttatcttttgttaaagaaata 227  Q
    |||||||||| || |||| | ||||||||||||  | |||||| ||||||||  ||||| |||||||| |||||||| ||||||| |||||||    
T  27481322 atttccataagctatccatgatagcttatgaaaataacttatagcttatatg-gaaacagtttgacttcgttttatcctttgttatagaaata 27481413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 178 - 229
Target Start/End: Original strand, 39591537 - 39591588
Alignment:
Q  178 aacttatatgaaaaacaatttgacttg-ttttatcttttgttaaagaaataac 229  Q
    |||||||||||||| |||||||||||  ||||||||||||||| |||||||||    
T  39591537 aacttatatgaaaa-caatttgactttattttatcttttgttatagaaataac 39591588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 148 - 227
Target Start/End: Complemental strand, 47177666 - 47177587
Alignment:
Q  148 tctccaagttagcttatgaaagcagcttataacttatatgaaaaacaatttgac-ttgttttatcttttgttaaagaaata 227  Q
    |||||||| |||||| ||||| ||||||||| |||||||| |||||||||| || ||||||| | ||||| || |||||||    
T  47177666 tctccaagatagcttttgaaaacagcttatagcttatatg-aaaacaatttaactttgttttgtattttgatatagaaata 47177587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 136 - 191
Target Start/End: Original strand, 9836882 - 9836937
Alignment:
Q  136 atttccataatctctccaagttagcttatgaaagcagcttataacttatatgaaaa 191  Q
    |||||||||| ||||||||| |||||||||||| ||| || |||||||||||||||    
T  9836882 atttccataagctctccaagatagcttatgaaaacaggttgtaacttatatgaaaa 9836937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 136 - 191
Target Start/End: Complemental strand, 11795134 - 11795079
Alignment:
Q  136 atttccataatctctccaagttagcttatgaaagcagcttataacttatatgaaaa 191  Q
    |||||||||| |||||||   |||||||||||| ||||||||||||||||||||||    
T  11795134 atttccataagctctccataatagcttatgaaatcagcttataacttatatgaaaa 11795079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 136 - 185
Target Start/End: Complemental strand, 8062371 - 8062322
Alignment:
Q  136 atttccataatctctccaagttagcttatgaaagcagcttataacttata 185  Q
    |||||||||||||||| ||| |||||||||||| ||||||||| ||||||    
T  8062371 atttccataatctctctaagatagcttatgaaaacagcttatagcttata 8062322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 142 - 226
Target Start/End: Original strand, 8823427 - 8823511
Alignment:
Q  142 ataatctctccaagttagcttatgaaagcagcttataacttatatgaaaaacaatttgac-ttgttttatcttttgttaaagaaat 226  Q
    |||| ||| ||||| ||||||||||||| || |||||||||| || || |||||| |||| |||||||||||||||||| ||||||    
T  8823427 ataagctcgccaagatagcttatgaaagtagattataacttacat-aagaacaatctgactttgttttatcttttgttatagaaat 8823511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 159 - 218
Target Start/End: Complemental strand, 4511047 - 4510988
Alignment:
Q  159 gcttatgaaagcagcttataacttatatgaaaaacaatttgacttgtttt-atcttttgtt 218  Q
    |||||||||| ||||||||||||||||||| ||| |||||||||| |||| ||||||||||    
T  4511047 gcttatgaaaacagcttataacttatatgagaaa-aatttgactttttttaatcttttgtt 4510988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 136 - 203
Target Start/End: Original strand, 6509331 - 6509397
Alignment:
Q  136 atttccataatctctccaagttagcttatgaaagcagcttataacttatatgaaaaacaatttgactt 203  Q
    ||||| |||| ||||||| | |||||||||||| ||||||||| ||||||| ||| ||||||||||||    
T  6509331 atttcaataagctctccaggatagcttatgaaaacagcttatagcttatat-aaatacaatttgactt 6509397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 89 - 178
Target Start/End: Original strand, 11569436 - 11569527
Alignment:
Q  89 agagtttatggaaagagcttatgacattt-cataagttgttt-caacaaatttccataatctctccaagttagcttatgaaagcagcttata 178  Q
    |||| ||||||||| |||||||||||| | |||||||||||| || |  |||| || |||||||||| | |||||||||||| |||||||||    
T  11569436 agagcttatggaaacagcttatgacatgtacataagttgttttcagcttattttcaaaatctctccatgatagcttatgaaaacagcttata 11569527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 136 - 191
Target Start/End: Original strand, 28769367 - 28769422
Alignment:
Q  136 atttccataatctctccaagttagcttatgaaagcagcttataacttatatgaaaa 191  Q
    |||||||||| ||||||||  |||||||||||| ||||||||| |||||| |||||    
T  28769367 atttccataaactctccaaaatagcttatgaaaacagcttatagcttataagaaaa 28769422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 160 - 229
Target Start/End: Complemental strand, 12361210 - 12361141
Alignment:
Q  160 cttatgaaagcagcttataacttatatgaaaaacaatttgactt-gttttatcttttgttaaagaaataac 229  Q
    ||||||||| ||||||||| |||||||| |||||||||||||||  ||||||||||  ||| |||||||||    
T  12361210 cttatgaaaacagcttatagcttatatg-aaaacaatttgacttcattttatctttatttatagaaataac 12361141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 136 - 208
Target Start/End: Complemental strand, 8062566 - 8062495
Alignment:
Q  136 atttccataatctctccaagttagcttatgaaagcagcttataacttatatgaaaaacaatttgacttgtttt 208  Q
    |||| ||||| ||||| ||| |||||||||| | || |||||| |||||||| ||||||||||||||| ||||    
T  8062566 attttcataaactctctaagatagcttatgagaacatcttatagcttatatg-aaaacaatttgacttttttt 8062495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 136 - 215
Target Start/End: Complemental strand, 31705127 - 31705047
Alignment:
Q  136 atttccataatctctccaagttagcttatgaaagcagcttataacttatatgaaaaacaatttgacttg-ttttatctttt 215  Q
    |||||||||| ||||| | |  ||||||||||| ||||||||| |||||||||||   |||||||| || |||||||||||    
T  31705127 atttccataaactctcaaggacagcttatgaaaacagcttatagcttatatgaaacgtaatttgacatgattttatctttt 31705047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 136 - 219
Target Start/End: Complemental strand, 34551162 - 34551079
Alignment:
Q  136 atttccataatctctccaagttagcttatgaaagcagcttataacttatatgaaaaacaatttgacttg-ttttatcttttgtta 219  Q
    |||| ||||| ||||||| | || |||| |||| || ||||||||||| ||| |||||||||||||||| | |||||||||||||    
T  34551162 attttcataagctctccaggataacttaagaaaacaacttataacttaaatg-aaaacaatttgacttgatgttatcttttgtta 34551079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 141 - 185
Target Start/End: Original strand, 41470344 - 41470388
Alignment:
Q  141 cataatctctccaagttagcttatgaaagcagcttataacttata 185  Q
    |||||||||| |||| |||||||||||| ||||||| ||||||||    
T  41470344 cataatctcttcaagatagcttatgaaaacagcttacaacttata 41470388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 139 - 229
Target Start/End: Complemental strand, 10143211 - 10143121
Alignment:
Q  139 tccataatctctccaagttagcttatgaaagcagcttataacttatatgaaaaacaatttgacttg-ttttatcttttgttaaagaaataac 229  Q
    ||||||| ||||||| | ||||||||||||  | |||||| ||||||| ||||||| ||||||||  ||||||||||||||| |||||||||    
T  10143211 tccataaactctccatgatagcttatgaaaaaaacttatagcttatat-aaaaacagtttgacttaattttatcttttgttatagaaataac 10143121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 127 - 191
Target Start/End: Original strand, 35099618 - 35099682
Alignment:
Q  127 tttcaacaaatttccataatctctccaagttagcttatgaaagcagcttataacttatatgaaaa 191  Q
    |||||||  |||||||||| ||||| | | ||||||||||||||||||||||||||  |||||||    
T  35099618 tttcaaccgatttccataagctctcaaggatagcttatgaaagcagcttataactttaatgaaaa 35099682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 148 - 218
Target Start/End: Complemental strand, 11513928 - 11513858
Alignment:
Q  148 tctccaagttagcttatgaaagcagcttataacttatatgaaaaacaatttgac-ttgttttatcttttgtt 218  Q
    |||||| | |||||||||||| || |||||| |||||||| ||||||||||||| || ||||||||||||||    
T  11513928 tctccatgatagcttatgaaaacaacttatagcttatatg-aaaacaatttgactttattttatcttttgtt 11513858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 148 - 191
Target Start/End: Complemental strand, 18066158 - 18066115
Alignment:
Q  148 tctccaagttagcttatgaaagcagcttataacttatatgaaaa 191  Q
    |||||||| |||||||||||| ||||||||| ||||||||||||    
T  18066158 tctccaagatagcttatgaaaacagcttatagcttatatgaaaa 18066115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 148 - 191
Target Start/End: Original strand, 18179280 - 18179323
Alignment:
Q  148 tctccaagttagcttatgaaagcagcttataacttatatgaaaa 191  Q
    |||||| | |||||||||||||||||||||| ||||||||||||    
T  18179280 tctccaggatagcttatgaaagcagcttatagcttatatgaaaa 18179323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 136 - 218
Target Start/End: Original strand, 22681213 - 22681295
Alignment:
Q  136 atttccataatctctccaagttagcttatgaaagcagcttataacttatatgaaaaacaatttgac-ttgttttatcttttgtt 218  Q
    ||||||||||  |||| | | ||| |||||||| ||||||||| |||||||| ||||||||||| | |||||||||||||||||    
T  22681213 atttccataagttctctaggatagattatgaaaacagcttatagcttatatg-aaaacaatttggctttgttttatcttttgtt 22681295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 136 - 178
Target Start/End: Complemental strand, 11488319 - 11488277
Alignment:
Q  136 atttccataatctctccaagttagcttatgaaagcagcttata 178  Q
    |||| ||||||||||||| | ||||||||||||||||||||||    
T  11488319 atttgcataatctctccaggatagcttatgaaagcagcttata 11488277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 157 - 191
Target Start/End: Complemental strand, 15377786 - 15377752
Alignment:
Q  157 tagcttatgaaagcagcttataacttatatgaaaa 191  Q
    |||||||||||| ||||||||||||||||||||||    
T  15377786 tagcttatgaaaacagcttataacttatatgaaaa 15377752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 136 - 227
Target Start/End: Original strand, 656805 - 656896
Alignment:
Q  136 atttccataatctctccaagttagcttatgaaagcagcttataacttatatgaaaaacaatttgact-tgttttatcttttgttaaagaaata 227  Q
    |||| ||||| |||| |||| |||||||||||| || |||| | |||||| | |||||||||||| | | ||||||||||||||| |||||||    
T  656805 attttcataagctctgcaagatagcttatgaaatcaacttacagcttatacg-aaaacaatttgattatattttatcttttgttatagaaata 656896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 148 - 192
Target Start/End: Complemental strand, 16353891 - 16353847
Alignment:
Q  148 tctccaagttagcttatgaaagcagcttataacttatatgaaaaa 192  Q
    |||||||| |||||||| ||| ||||||||| |||||||||||||    
T  16353891 tctccaagatagcttataaaaacagcttatagcttatatgaaaaa 16353847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 136 - 219
Target Start/End: Original strand, 18962066 - 18962149
Alignment:
Q  136 atttccataatctctccaagttagcttatgaaagcagcttataacttatatgaaaaacaatttgac-ttgttttatcttttgtta 219  Q
    ||||||||| |||||||| | ||||||||||||  || ||||| |||||||| |||||| ||| || || |||||||||||||||    
T  18962066 atttccatagtctctccatgatagcttatgaaaatagtttatagcttatatg-aaaacagtttaactttattttatcttttgtta 18962149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 127 - 191
Target Start/End: Complemental strand, 43205360 - 43205296
Alignment:
Q  127 tttcaacaaatttccataatctctccaagttagcttatgaaagcagcttataacttatatgaaaa 191  Q
    |||||||  |||||||||| ||||||  | |||||||||||| ||| ||||| ||||||||||||    
T  43205360 tttcaacttatttccataagctctccgtgatagcttatgaaaacagattatatcttatatgaaaa 43205296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 80 - 203
Target Start/End: Complemental strand, 37273234 - 37273107
Alignment:
Q  80 ctgttcggtagagtttatggaaagagcttatgacatttc-ataagttgttt-caacaaatttccataatctctccaagttagcttatgaaagcag---ct 174  Q
    ||||| || |||| ||||||||| | |||||||||| || ||||||||||| ||||  ||||||||||  |||||||| |||||||||||| |||    |    
T  37273234 ctgtttgggagagcttatggaaacaacttatgacatgtccataagttgttttcaacttatttccataagttctccaagatagcttatgaaaacagtttat 37273135  T
Q  175 tataacttatatgaaaaacaatttgactt 203  Q
    |||| ||||||| ||||||||||||||||    
T  37273134 tatatcttatat-aaaaacaatttgactt 37273107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 104 - 185
Target Start/End: Original strand, 39602204 - 39602287
Alignment:
Q  104 agcttatgacat-ttcataagttgttt-caacaaatttccataatctctccaagttagcttatgaaagcagcttataacttata 185  Q
    |||||||||||| ||||||| |||||| ||||  |||| |||||  |||| ||| |||||||||||| ||||||||||||||||    
T  39602204 agcttatgacatgttcataaattgttttcaacttattttcataagttctcaaagatagcttatgaaaacagcttataacttata 39602287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 138 - 219
Target Start/End: Original strand, 1125796 - 1125878
Alignment:
Q  138 ttccataatctctccaagttagcttatgaaagcagcttataacttatatgaaaaacaatttgacttg-ttttatcttttgtta 219  Q
    |||||||| ||||||||| || |||| |||| ||  ||||| ||||||||||||||| ||||| ||| |||||||||| ||||    
T  1125796 ttccataagctctccaagataacttaagaaaacaagttatagcttatatgaaaaacagtttgaattgattttatctttagtta 1125878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 137 - 214
Target Start/End: Complemental strand, 2201169 - 2201092
Alignment:
Q  137 tttccataatctctccaagttagcttatgaaagcagcttataacttatatgaaaaacaatttgac-ttgttttatcttt 214  Q
    ||||| ||| || |||||| ||||| |||||| ||||||||| |||||||| |||||| |||||| |||||||||||||    
T  2201169 tttccttaaactatccaagatagctaatgaaaacagcttatagcttatatg-aaaacagtttgactttgttttatcttt 2201092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 158 - 219
Target Start/End: Original strand, 23530234 - 23530296
Alignment:
Q  158 agcttatgaaagcagcttataacttatatgaaaaacaatttgac-ttgttttatcttttgtta 219  Q
    ||||||||||| || ||||||  |||||||||||| |||||||| || |||||||||||||||    
T  23530234 agcttatgaaaacaacttatactttatatgaaaaataatttgactttattttatcttttgtta 23530296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 136 - 186
Target Start/End: Original strand, 24158531 - 24158581
Alignment:
Q  136 atttccataatctctccaagttagcttatgaaagcagcttataacttatat 186  Q
    |||||||||| ||||||| | |||||||||||| |||||||| ||||||||    
T  24158531 atttccataagctctccaggatagcttatgaaaacagcttattacttatat 24158581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 140 - 227
Target Start/End: Original strand, 24887315 - 24887402
Alignment:
Q  140 ccataatctctccaagttagcttatgaaagcagcttataacttatatgaaaaacaatttgac-ttgttttatcttttgttaaagaaata 227  Q
    |||||| ||||||| | |||||||||||| |||||| || |||||||| || ||| |||||| || |||||||| |||||| |||||||    
T  24887315 ccataagctctccaggatagcttatgaaaacagcttttagcttatatg-aatacagtttgactttattttatctattgttatagaaata 24887402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 147 - 191
Target Start/End: Complemental strand, 52619034 - 52618990
Alignment:
Q  147 ctctccaagttagcttatgaaagcagcttataacttatatgaaaa 191  Q
    |||| |||| |||||| ||||| ||||||||||||||||||||||    
T  52619034 ctcttcaagatagcttgtgaaaacagcttataacttatatgaaaa 52618990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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