View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4602_low_15 (Length: 314)
Name: NF4602_low_15
Description: NF4602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4602_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 8 - 297
Target Start/End: Original strand, 29317411 - 29317701
Alignment:
| Q |
8 |
atcaatgtagacacattttacatatcttctacttactaagataacggataatttccaattttattagaccactttgagagaatgtttaactaagctaatc |
107 |
Q |
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| T |
29317411 |
atcaatgtagacacattttacatatcttctacttactaagataacggataatttccaattttattagaccactttgagagaatgtttaactaagctaatc |
29317510 |
T |
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| Q |
108 |
atttaggaaaaagtttgatggtacaacaacactacgtaccgatgaaaaacaacgaacagataggaacaatatgaagtgca-nnnnnnnnnnnnnnncgaa |
206 |
Q |
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| T |
29317511 |
atttaggaaaaagtttgatggtacaacaacactacgtaccgatgaaaaacaacgaacagataggaacaatatgaagtgcatttttaattttatttttgaa |
29317610 |
T |
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| Q |
207 |
aaaatcatgtgcattagtttgcaatttattttgatttttatgtatttaaaaaatataataccactaccctatttttagggtgccagtagtg |
297 |
Q |
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| T |
29317611 |
aaaatcatgtgcattagtttgcaatttattttgatttttatgtatttaaaaaatataataccactaccctatttttagggtgccagtagtg |
29317701 |
T |
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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 271
Target Start/End: Original strand, 41552990 - 41553043
Alignment:
| Q |
218 |
cattagtttgcaatttattttgatttttatgtatttaaaaaatataataccact |
271 |
Q |
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| T |
41552990 |
cattagattgcagtttattttgacttttatgtattttgaaaaaataataccact |
41553043 |
T |
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