View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4602_low_18 (Length: 298)
Name: NF4602_low_18
Description: NF4602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4602_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 245; Significance: 1e-136; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 8 - 280
Target Start/End: Original strand, 2303577 - 2303848
Alignment:
| Q |
8 |
agattatactactcagaatgaaatgattccaaccaaaaacctcttttggacacaaacacacagtaaaaaccttataattattgatctagaataacaaaaa |
107 |
Q |
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|||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2303577 |
agattagactgctcagaatgaaatgattccaaccaaaaacctcttttggacacaaacacacagtaaaaaccttataattattgatctagaataacaaaaa |
2303676 |
T |
|
| Q |
108 |
attcaaagcatatgccagaggaaatgtaaagtgaggcaaaataaaatgttcacctgttttgtaagttggacggcatgtgatttctatctcccttagtcct |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| |
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| T |
2303677 |
attcaaagcatatgccagaggaaatgtaaagtgaggcaaaataaaatgttcacctgttttgtaagttggacggcatgtgatttctatct-ccgtagtcct |
2303775 |
T |
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| Q |
208 |
taaagttttggatcgatttgcctgactaagattaaattctgcaaggggagctttccgaacattgagaaattca |
280 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
2303776 |
taaagttttggatcgatttgcatgactaagattaaattctgcaaggggaactttccgaacattgagaaattca |
2303848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 8 - 152
Target Start/End: Complemental strand, 34985033 - 34984892
Alignment:
| Q |
8 |
agattatactactcagaatgaaatgattccaaccaaaaacctcttttggacacaaacacacagtaaaaaccttataattattgatctagaataacaaaaa |
107 |
Q |
| |
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|||||| ||| ||||||||| || ||||||||||||||||||||| || ||||| |||| |||||||||||||||||||||| ||||||| |||||| |
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| T |
34985033 |
agattagactgctcagaatgtaaggattccaaccaaaaacctcttgagggcacaa---cacaataaaaaccttataattattgatgtagaatagcaaaaa |
34984937 |
T |
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| Q |
108 |
attcaaagcatatgccagaggaaatgtaaagtgaggcaaaataaa |
152 |
Q |
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|| |||||||||||||||| ||||||||||||||||||||||||| |
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| T |
34984936 |
atacaaagcatatgccagaagaaatgtaaagtgaggcaaaataaa |
34984892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 8 - 152
Target Start/End: Complemental strand, 34977777 - 34977637
Alignment:
| Q |
8 |
agattatactactcagaatgaaatgattccaaccaaaaacctcttttggacacaaacacacagtaaaaaccttataattattgatctagaataacaaaaa |
107 |
Q |
| |
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|||||| ||| |||||||||||| ||||||||||||||||||||| || ||||| |||| ||| | ||||||||||||||| |||||||||||||| |
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| T |
34977777 |
agattagactgctcagaatgaaaggattccaaccaaaaacctcttgagggcacaa---cacaataagtatcttataattattgatgtagaataacaaaaa |
34977681 |
T |
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| Q |
108 |
attcaaagcatatgccagaggaaatgtaaagtgaggcaaaataaa |
152 |
Q |
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| T |
34977680 |
aaa-aaagcatatgccagaagaaatgtaaagtgaggcaaaataaa |
34977637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 150 - 280
Target Start/End: Complemental strand, 34991479 - 34991350
Alignment:
| Q |
150 |
aaaatgttcacctgttttgtaagttggacggcatgtgatttctatctcccttagtccttaaagttttggatcgatttgcctgactaagattaaattctgc |
249 |
Q |
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|||||||||||||||| | | ||||| || |||||||||||||||| |||||||||||||||| |||| ||||| ||| |||||||||||||||||| |
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| T |
34991479 |
aaaatgttcacctgttctccgatttggatggtttgtgatttctatctcc-ttagtccttaaagtttcggattgattttcctcactaagattaaattctgc |
34991381 |
T |
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| Q |
250 |
aaggggagctttccgaacattgagaaattca |
280 |
Q |
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||||||| | | || ||||||||||| |||| |
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| T |
34991380 |
aaggggaacatcccaaacattgagaacttca |
34991350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 183 - 256
Target Start/End: Complemental strand, 34984771 - 34984699
Alignment:
| Q |
183 |
tgtgatttctatctcccttagtccttaaagttttggatcgatttgcctgactaagattaaattctgcaagggga |
256 |
Q |
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||||||||||||||| ||| |||||||||||||| || |||||| |||||||||||||||||||||||||||| |
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| T |
34984771 |
tgtgatttctatctca-ttaatccttaaagttttgaattgatttggctgactaagattaaattctgcaagggga |
34984699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 65 - 152
Target Start/End: Complemental strand, 34991671 - 34991583
Alignment:
| Q |
65 |
acacagtaaaaaccttataattattgatctagaataacaaaaaatt-caaagcatatgccagaggaaatgtaaagtgaggcaaaataaa |
152 |
Q |
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||||| ||||||||||||||||||| || |||||||| |||||| | ||||| |||||||||| |||| ||||||||||||||||||| |
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| T |
34991671 |
acacaataaaaaccttataattattaatgtagaataaaaaaaaaatacaaagaatatgccagaagaaaaataaagtgaggcaaaataaa |
34991583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 8 - 152
Target Start/End: Complemental strand, 40582361 - 40582217
Alignment:
| Q |
8 |
agattatactactcagaatgaaatgattccaaccaaaaacctcttttggacacaaacacacagtaaaaaccttataattattgatctagaataacaaaaa |
107 |
Q |
| |
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|||||| ||| || ||||||||||||||||||||||||||||||| || |||| |||| || |||||||||||||||||| |||||||||||||| |
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| T |
40582361 |
agattagactgcttagaatgaaatgattccaaccaaaaacctcttgagggtacaa---cacaatagaaaccttataattattgacgtagaataacaaaaa |
40582265 |
T |
|
| Q |
108 |
a---ttcaaagcatatgccagaggaaatgtaaagtgaggcaaaataaa |
152 |
Q |
| |
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| | |||||||| || |||| ||||||||||||||||||||||||| |
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| T |
40582264 |
aaaatacaaagcatgtggcagaagaaatgtaaagtgaggcaaaataaa |
40582217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 185 - 253
Target Start/End: Complemental strand, 40582128 - 40582061
Alignment:
| Q |
185 |
tgatttctatctcccttagtccttaaagttttggatcgatttgcctgactaagattaaattctgcaagg |
253 |
Q |
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|||||||||||||| |||||| |||||||||||||| |||||||| |||||||||||||| ||||||| |
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| T |
40582128 |
tgatttctatctcc-ttagtcattaaagttttggattgatttgccacactaagattaaattatgcaagg |
40582061 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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