View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4602_low_19 (Length: 263)
Name: NF4602_low_19
Description: NF4602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4602_low_19 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 11 - 263
Target Start/End: Complemental strand, 36151640 - 36151388
Alignment:
| Q |
11 |
cacagaccctgcagcagaaacatcagcaggtaaatccttgccatcaccatcatcactaccagccccactaccatcatctgcaactgaagaattcgttttt |
110 |
Q |
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| T |
36151640 |
cacagaccctgcagcagaaatatcagcaggtaaatccttgccatcaccatcatcactaccagcaccactaccatcatctgcaactgaagaattcgttttt |
36151541 |
T |
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| Q |
111 |
ccagccttaggcaacaaacccttagctggtgcaggagccagagctggagccttagccggaagaacaagatcaagaggcataagtaccttatcaacctgat |
210 |
Q |
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| T |
36151540 |
ccagccttaggcaacaaacccttagctggtgcaggagccagagctggagccttagccggaagaacaagatcaagaggcataagtaccttatcaacctgat |
36151441 |
T |
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| Q |
211 |
aaatagcaagtttgctgtcggtataaacagtacgggaaacgttagcagtgact |
263 |
Q |
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| T |
36151440 |
aaatagcaagtttgctgtcggtataaacagtaccggtaacggtagcattgact |
36151388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 11 - 263
Target Start/End: Complemental strand, 36155026 - 36154774
Alignment:
| Q |
11 |
cacagaccctgcagcagaaacatcagcaggtaaatccttgccatcaccatcatcactaccagccccactaccatcatctgcaactgaagaattcgttttt |
110 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
36155026 |
cacagaccctgcagcagaaacatcagcaggtaaatccttaccatcaccatcatcactaccagcaccactaccatcatctgcaactgaagaattcgttttt |
36154927 |
T |
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| Q |
111 |
ccagccttaggcaacaaacccttagctggtgcaggagccagagctggagccttagccggaagaacaagatcaagaggcataagtaccttatcaacctgat |
210 |
Q |
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| T |
36154926 |
ccagccttaggcaacaaacccttagctggtgcaggagccagagctggagccttagccggaagaacaagatcaagaggcataagtaccttatcaacctgat |
36154827 |
T |
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| Q |
211 |
aaatagcaagtttgctgtcggtataaacagtacgggaaacgttagcagtgact |
263 |
Q |
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| T |
36154826 |
aaatagcaagtttgctgtcggtataaacagtaccggtaacggtagcattgact |
36154774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 156 - 238
Target Start/End: Complemental strand, 5274006 - 5273924
Alignment:
| Q |
156 |
ggagccttagccggaagaacaagatcaagaggcataagtaccttatcaacctgataaatagcaagtttgctgtcggtataaac |
238 |
Q |
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| T |
5274006 |
ggagctttagcaggaagcacaagatcaagaggaacaagaaccttgtcaacctgatatatagctagtttgttgtctgtgtaaac |
5273924 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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