View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4602_low_21 (Length: 241)
Name: NF4602_low_21
Description: NF4602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4602_low_21 |
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Alignment Details
Target: chr3 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 50372756 - 50372531
Alignment:
| Q |
1 |
gtattactaggattttataacgggacggtcaaatgaatttgtttcctcttgttatagttcctgctttctattctattattatcatttttctttattctaa |
100 |
Q |
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| T |
50372756 |
gtattactaggattttataacgggacggtcaaatgaatttgtttcctcttgttatagttcccgctttctattctattattatcatttttctt-attctaa |
50372658 |
T |
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| Q |
101 |
ttcaacttgaatgctctgtttcttccttagctcagttgatattggttatatttgcaggaatttggaaggtcaaagttttggttcataaaaattacagtgc |
200 |
Q |
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| T |
50372657 |
ttcaatttgaatgctctgtttcttccttagctcagttgatattggttatatttgcaggaatttggaaggtcaaagttttggttcataaaaattacagtgc |
50372558 |
T |
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| Q |
201 |
aatggaaattgaaggaaatgtaagagg |
227 |
Q |
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| T |
50372557 |
aaaggaaattgaaggaaatgtaagagg |
50372531 |
T |
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