View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4602_low_24 (Length: 220)

Name: NF4602_low_24
Description: NF4602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4602_low_24
NF4602_low_24
[»] chr3 (6 HSPs)
chr3 (1-204)||(36314028-36314226)
chr3 (101-156)||(36334191-36334246)
chr3 (13-89)||(36336844-36336920)
chr3 (9-88)||(36334080-36334156)
chr3 (5-46)||(36321405-36321446)
chr3 (120-160)||(36328302-36328342)


Alignment Details
Target: chr3 (Bit Score: 176; Significance: 6e-95; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 36314028 - 36314226
Alignment:
Q  1 ctggtggtcctgttgtgctctcactttcctcttccattgatggaatagaagaagaagccaagcaaccgaaacgatttgataatttgatttccatataccg 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         
T  36314028 ctggtggtcctgttgtgctctcactttcctcttccattgatggaatagaagaagaagccaagcaaccgaaacgatttgataatttgatttccata----- 36314122  T
Q  101 taccgtgaaagtaaacgtttggaaagtgaaattatcaataaacttttaaaaggattgttggaagtcacccgtaacaccaccaacttgcggatgaaagtgt 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||    
T  36314123 taccgtgaaagtaaacgtttggaaagtgaaattatcaataaacttttaaaaggattgttggaagtcacgcgtaacaccaccaacttgcggacgaaagtgt 36314222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 101 - 156
Target Start/End: Original strand, 36334191 - 36334246
Alignment:
Q  101 taccgtgaaagtaaacgtttggaaagtgaaattatcaataaacttttaaaaggatt 156  Q
    ||||||||||||||||||||||||||||||| |||||||||||||| |||||||||    
T  36334191 taccgtgaaagtaaacgtttggaaagtgaaaatatcaataaactttgaaaaggatt 36334246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 13 - 89
Target Start/End: Original strand, 36336844 - 36336920
Alignment:
Q  13 ttgtgctctcactttcctcttccattgatggaatagaagaagaagccaagcaaccgaaacgatttgataatttgatt 89  Q
    ||||||||||||||||||||||||||| |||| | ||||||   |||||| ||| ||||||||| ||||||||||||    
T  36336844 ttgtgctctcactttcctcttccattgctggagttgaagaaatggccaaggaactgaaacgattagataatttgatt 36336920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 9 - 88
Target Start/End: Original strand, 36334080 - 36334156
Alignment:
Q  9 cctgttgtgctctcactttcctcttccattgatggaatagaagaagaagccaagcaaccgaaacgatttgataatttgat 88  Q
    ||||||||||||| ||||||||||| ||||| | ||||| ||||||    |||||||| |||||||||||||||||||||    
T  36334080 cctgttgtgctctaactttcctctttcattgtttgaatacaagaagt---caagcaactgaaacgatttgataatttgat 36334156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 46
Target Start/End: Original strand, 36321405 - 36321446
Alignment:
Q  5 tggtcctgttgtgctctcactttcctcttccattgatggaat 46  Q
    ||||||||||||||||||||||||||||||||| | ||||||    
T  36321405 tggtcctgttgtgctctcactttcctcttccatggttggaat 36321446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 120 - 160
Target Start/End: Original strand, 36328302 - 36328342
Alignment:
Q  120 tggaaagtgaaattatcaataaacttttaaaaggattgttg 160  Q
    ||||||||||||||||| ||||||||| |||||||||||||    
T  36328302 tggaaagtgaaattatcgataaactttgaaaaggattgttg 36328342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University