View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4602_low_5 (Length: 446)
Name: NF4602_low_5
Description: NF4602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4602_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 403; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 12 - 430
Target Start/End: Complemental strand, 37865332 - 37864914
Alignment:
| Q |
12 |
atgagatattatcaattcgattgcaagaaatagttttagagctgaatattgtaaatttgagaggttttaccaagtttaagaaagttaatatcagtttcat |
111 |
Q |
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| T |
37865332 |
atgagatattatcaattcgattgcaagaaatagttttagagctgaagattgtaaatttgagaggttttaccaagtttaagaaagttaatatcagtatcat |
37865233 |
T |
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| Q |
112 |
taatgattcatagcacagtgttgcggccaaccttgcatgaactgataatggctatgtcaacgaagcatggcttgagagggaagttgaatggaactaagaa |
211 |
Q |
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| T |
37865232 |
taatgattcatagcacagtgttgcagccaaccttgcatgaactgataatggctatgtcaacgaagcatggcttgagagggaagttgaatggaactaagaa |
37865133 |
T |
|
| Q |
212 |
gaaaataagttagttagaatctttagtagaatcaaatttctaaaataaataaacttaccgaaccagttgaacatttttctcctcgttttctcctcgttct |
311 |
Q |
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| T |
37865132 |
gaaaataagttagttagaatctttagtagaatcaaatttctaaaataaataaacttaccgaaccagttgtacatttttctcctcgttttctcctcgttct |
37865033 |
T |
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| Q |
312 |
aaaaattaaaactacttaccgaaccagttgtacaattttaacccatcaatggcatgaaccacttaatcatatacgaccttaaaactaaaaattagaacta |
411 |
Q |
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| T |
37865032 |
aaaaattaaaactacttaccgaaccagttgtacaattttaacccatcaatggcatgaaccacttaatcatatacgaccttaaaactaaaaattagaacta |
37864933 |
T |
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| Q |
412 |
ataatatgcaattagatac |
430 |
Q |
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| T |
37864932 |
ataatatgcaattagatac |
37864914 |
T |
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