View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4602_low_9 (Length: 350)
Name: NF4602_low_9
Description: NF4602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4602_low_9 |
 | |
|
| [»] chr8 (2 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 326; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 17 - 350
Target Start/End: Original strand, 36154402 - 36154735
Alignment:
| Q |
17 |
acccaccattgacataatcaacattcttcaaaaagccaaaaggttctccgttctaatccgtcttctcaaaacaacacaattaatcaatcaactcaactca |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36154402 |
acccaccattgacataatcaacattcttcaaaaagccaaaaggttctccgttctaatccgtcttctcaaaacaacacaattaatcaatcaactcaactcg |
36154501 |
T |
|
| Q |
117 |
cagctggtatcatcgccatcaggttccggagggttaaccatttttgcaccagaagattctgcattctccaaactcaaagcagggttcctcaactccctca |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36154502 |
cagctggtatcatcgccatcaggttccggagggttaaccatttttgcaccagaagattctgcattctccaaactcaaagcagggttcctcaactccctca |
36154601 |
T |
|
| Q |
217 |
ctgatagacaaaaagtcgaactcttacagtttcactcccttgcttcattcgtttctatttcaaacttcgataccttaaccaaccctgttcaaacccaagc |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
36154602 |
ctgatagacaaaaagtcgaactcttacagtttcactcccttgcttcattcgtttctatttcaaacttcgataccttaaccaaccctgttcaaacacaagc |
36154701 |
T |
|
| Q |
317 |
cggtgatgatgctaggcttcaactgaacgtcact |
350 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
36154702 |
cggtgatgatgctaggcttcaactgaacgtcact |
36154735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 17 - 350
Target Start/End: Original strand, 36151016 - 36151349
Alignment:
| Q |
17 |
acccaccattgacataatcaacattcttcaaaaagccaaaaggttctccgttctaatccgtcttctcaaaacaacacaattaatcaatcaactcaactca |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36151016 |
acccaccattgacataatcaacattcttcaaaaagccaaaaggttctccgttctaatccgtcttctcaaaacaacacaattaatcaatcaactcaactcg |
36151115 |
T |
|
| Q |
117 |
cagctggtatcatcgccatcaggttccggagggttaaccatttttgcaccagaagattctgcattctccaaactcaaagcagggttcctcaactccctca |
216 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36151116 |
cagctggtatcatcgccatcaggttccggtgggttaaccatttttgcaccagaagattctgcattctccaaactcaaagcagggttcctcaactccctca |
36151215 |
T |
|
| Q |
217 |
ctgatagacaaaaagtcgaactcttacagtttcactcccttgcttcattcgtttctatttcaaacttcgataccttaaccaaccctgttcaaacccaagc |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
36151216 |
ctgatagacaaaaagtcgaactcttacagtttcactcccttgcttcattcgtttctatttcaaacttcgataccttaaccaaccctgttcaaacacaagc |
36151315 |
T |
|
| Q |
317 |
cggtgatgatgctaggcttcaactgaacgtcact |
350 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
36151316 |
cggtgatgatgctaggcttcaactgaacgtcact |
36151349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 64; Significance: 6e-28; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 46 - 325
Target Start/End: Original strand, 5273544 - 5273832
Alignment:
| Q |
46 |
aaaaagccaaaaggttctccgttctaatccgtcttctcaaaacaacacaattaatcaatcaactcaactcacagctggt---atcatcgccatcaggttc |
142 |
Q |
| |
|
||||||| ||||| ||||| ||||| || ||||||||||||||||| || ||||| || |||||||||||||| || || |||||| |||||| ||| |
|
|
| T |
5273544 |
aaaaagcaaaaagattctcagttctcattcgtcttctcaaaacaactcagttaataaaccaactcaactcacaactagttacatcatcatcatcagattc |
5273643 |
T |
|
| Q |
143 |
c------ggagggttaaccatttttgcaccagaagattctgcattctccaaactcaaagcagggttcctcaactccctcactgatagacaaaaagtcgaa |
236 |
Q |
| |
|
|| || |||||| |||||||||||||||| ||| || || ||||||||| |||| ||||| || ||||||| ||| ||||| ||||| ||| |
|
|
| T |
5273644 |
tagcagtggtggcttaaccctttttgcaccagaagacaatgccttttcaaaactcaaaccaggtttccttaattccctcagtgacagacacaaagtagaa |
5273743 |
T |
|
| Q |
237 |
ctcttacagtttcactcccttgcttcattcgtttctatttcaaacttcgataccttaaccaaccctgttcaaacccaagccggtgatga |
325 |
Q |
| |
|
|| ||||| || ||| | ||| | |||||| | || || || |||||||| |||||||||||||| |||||||| |||||||||||||| |
|
|
| T |
5273744 |
ctgttacaattccacacactttcctcattcatctcaatctcgaacttcgacaccttaaccaacccggttcaaacacaagccggtgatga |
5273832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University