View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4603-Insertion-1 (Length: 992)
Name: NF4603-Insertion-1
Description: NF4603
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4603-Insertion-1 |
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| [»] scaffold1572 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 482; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 482; E-Value: 0
Query Start/End: Original strand, 421 - 988
Target Start/End: Original strand, 21318451 - 21319024
Alignment:
| Q |
421 |
ttagagagttactattatgcccat--ggatattcaacttctgtgcattctcaaggctttattccaaaggtcttgctctgttaaggttttgctcattttga |
518 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| | ||||||||| |
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| T |
21318451 |
ttagagagttactattatgcccatatggatattcaacttctgtgcattctcaaggctttattccataggtcttgttctgttaaggtttggttcattttga |
21318550 |
T |
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| Q |
519 |
tttctttttgtaattatatgttttgaatcataacctattatgctcttgtaacgatgttttgatccactatgtgtttgttcagaattaacaaagtgaatca |
618 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| | |||||||||||||||||| | ||| |||||| |
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| T |
21318551 |
tttctttttgtaattatatgttttgaatcataacctattatgctcttgtaatgatgttctgatcaatcatgtgtttgttcagaattcaggaagcgaatca |
21318650 |
T |
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| Q |
619 |
atctacttgcttttgttagataaatcttgaatgtttttgattcagctatgaaatagggaaactctttcatcaatcttatatctaaattgagagtaggtgg |
718 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
21318651 |
atctacttgcttttgtaagataaatcttgaatgtttttgattcagctatgaaatagggaaactctgtcatcaatcttatatctaaattgagagtaggtgg |
21318750 |
T |
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| Q |
719 |
gtgttatagggagcttaaatgatgaggaaaaggtcttgagaagagttaaagagagattagaaatggtggaatttaatgatttagagaaagacaaatgggt |
818 |
Q |
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| T |
21318751 |
gtgttatagggagcttaaatgatgaggaaaaggtcttgagaagagttaaggagagattagaaatggtggaatttaatgatttagagaaagacaaatgggt |
21318850 |
T |
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| Q |
819 |
ttggacaggtggagtattaacaagtatctatcccgccagggaagcttacaaggctttaatgttgggagtgc----cacatgtaatccgtcttggtcaaga |
914 |
Q |
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| T |
21318851 |
ttggacaggtggagtattaacaagtatctatcccgccagggaagcttacaaggctttaatgttgggagtgccaaacacatgtaatccgtcttggtcaaga |
21318950 |
T |
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| Q |
915 |
gcttggaataaatcgatcccgtcaaagatatctatgttggtatggagaatgctttaaattaggatagctacaaa |
988 |
Q |
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| T |
21318951 |
gcttggaataaatcgatcccgtcaaagatatctatgttggtatggagaatgctttaaattaggatagctacaaa |
21319024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 623 - 696
Target Start/End: Original strand, 3854688 - 3854761
Alignment:
| Q |
623 |
acttgcttttgttagataaatcttgaatgtttttgattcagctatgaaatagggaaactctttcatcaatctta |
696 |
Q |
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| T |
3854688 |
acttgcttttgtaagataaaacttgaatgttttggattcaactgtgaaatagggaaattttgtcatcagtctta |
3854761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 359 - 457
Target Start/End: Original strand, 3854431 - 3854528
Alignment:
| Q |
359 |
tctattcaagagtttatcattctcaaagcttttaaagttactaacttctgtgtatttgatgcttagagagttactattatgcccatggatattcaactt |
457 |
Q |
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| T |
3854431 |
tctattcgagagtttgtcattatcaaggcttttaaagttcttaacttctgcggcattgacgctaagagagttactattatg-caaaggatattcaactt |
3854528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 618 - 667
Target Start/End: Complemental strand, 3915061 - 3915012
Alignment:
| Q |
618 |
aatctacttgcttttgttagataaatcttgaatgtttttgattcagctat |
667 |
Q |
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| T |
3915061 |
aatctacttgcttttgtgagataaaactttaatgtttttgattcatctat |
3915012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1572 (Bit Score: 233; Significance: 1e-128; HSPs: 2)
Name: scaffold1572
Description:
Target: scaffold1572; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 475 - 823
Target Start/End: Complemental strand, 1632 - 1264
Alignment:
| Q |
475 |
tttattccaaaggtcttgctctgttaaggttttgctcattttgatttctttttgtaattatatgttttgaatcataacctattatgctcttgtaacgatg |
574 |
Q |
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| T |
1632 |
tttattccataggtcttgttctgttaaggtttggttcattttgatttctttttgtaattatatgttttgaatcataacctattatgctcttgtaacgatg |
1533 |
T |
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| Q |
575 |
ttttgatccactatgtgtttgttcagaattaacaaagtgaatcaatctacttgcttttgttagataaatcttgaatgtttttgattcagctatgaaatag |
674 |
Q |
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| T |
1532 |
ttctgatccactatgtgtttgttcagaattaacaaagtgaatcaatctacttgcttttgttagataaatcttgaatgtttttgattcagctatgaaatag |
1433 |
T |
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| Q |
675 |
ggaaactctttcatcaatcttatatctaaattgagagtaggtgggtgtt--------atagggagcttaaatgatg----aggaaaagg-------tctt |
755 |
Q |
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| T |
1432 |
ggaaacttggtcatcaatcttatgtctaaattgcgagtaggtgggtgttaagtttgaacagggagcttaaatgatgaagaaggaaaaggtctcgactctt |
1333 |
T |
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| Q |
756 |
gagaagagttaaagagaga-ttagaaatggtggaatttaatgatttagagaaagacaaatgggtttgga |
823 |
Q |
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| T |
1332 |
gagaagagttaaagagagatttagaaatggtggaatttaatgatttagaggaatgcaaatgggtttgga |
1264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1572; HSP #2
Raw Score: 68; E-Value: 8e-30
Query Start/End: Original strand, 917 - 988
Target Start/End: Complemental strand, 1268 - 1197
Alignment:
| Q |
917 |
ttggaataaatcgatcccgtcaaagatatctatgttggtatggagaatgctttaaattaggatagctacaaa |
988 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
1268 |
ttggaataaatcgatcccgtcaaagatatctatgttggtatggagaatgcttcaaattaggatagctacaaa |
1197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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