View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4603-Insertion-10 (Length: 387)
Name: NF4603-Insertion-10
Description: NF4603
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4603-Insertion-10 |
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Alignment Details
Target: chr2 (Bit Score: 315; Significance: 1e-177; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 8 - 366
Target Start/End: Complemental strand, 41447876 - 41447518
Alignment:
| Q |
8 |
tgagctatcaaactagatcttcaagtgtgttcatacaatgaaatacatcgaatttggcgtctttagggagaaaagattcaagattaagcctcatgaatac |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| |
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| T |
41447876 |
tgagctatcaaactagatcttcaagtgtgttcatacaatgaaatacatcgaatttggcgtctttagagagaaaagattcaaggttaagcctcatgaatac |
41447777 |
T |
|
| Q |
108 |
cacgttatgaaagtactattactattggagccaatatctttagacaaatcaaattagcatcaaaattaacaaggtaaagaaattaaggaacttttttatt |
207 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41447776 |
cacattatgaaagtactattactattggagccaatatctttagacaaatcaaactagcatcaaaattaacaaggtaaagaaattaaggaacttttttatt |
41447677 |
T |
|
| Q |
208 |
attgaaacttagaaaccagagttacataaattcatctcatatctgtgtaccaaaaacatacacagaagcaaaagaatgccattaacaaatcaaaggagtt |
307 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41447676 |
attgaaacttagaaaccagagttacatagattcatctcatatctatgtaccaaaaacatacacagaagcaaaagaatgccattaacaaatcaaaggagtt |
41447577 |
T |
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| Q |
308 |
aaacaactcaaagaaaaaggagaccaaacataaatcaattttaccaaaagtatattctc |
366 |
Q |
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||||||||| |||| ||||| |||||||| |||||||||||||||||||||||||||| |
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| T |
41447576 |
aaacaactcgaagaggaaggaaaccaaacaaaaatcaattttaccaaaagtatattctc |
41447518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 77 - 290
Target Start/End: Complemental strand, 41458027 - 41457815
Alignment:
| Q |
77 |
gaaaagattcaagattaagcctcatgaataccacgttatgaaagtactattactattggagccaatatctttagacaaatcaaattagcatcaaaattaa |
176 |
Q |
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|||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| |
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| T |
41458027 |
gaaaagattcaacgttaagcctcatgaacaccacgttatgaaagtactattactattggagccaatatctttagacaaaacaaattagcatcaaacttaa |
41457928 |
T |
|
| Q |
177 |
caaggtaaagaaattaaggaacttttttattattgaaacttagaaaccagagttacataaattcatctcatatctgtgtaccaaaaacatacacagaagc |
276 |
Q |
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|||||||||| ||||||||||| |||| | |||||||||||||||||||||| ||||||| |||||||||||| ||||||||| ||||||| |||||||| |
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| T |
41457927 |
caaggtaaaggaattaaggaac-ttttgaatattgaaacttagaaaccagagctacataagttcatctcatatttgtgtaccataaacataaacagaagc |
41457829 |
T |
|
| Q |
277 |
aaaagaatgccatt |
290 |
Q |
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||||||||| |||| |
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| T |
41457828 |
aaaagaatgtcatt |
41457815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 273 - 369
Target Start/End: Complemental strand, 41457797 - 41457701
Alignment:
| Q |
273 |
aagcaaaagaatgccattaacaaatcaaaggagttaaacaactcaaagaaaaaggagaccaaacataaatcaattttaccaaaagtatattctccat |
369 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||| |||| ||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
41457797 |
aagcaaaagaatgtcattaacaaatcaaaggagttaaacaactcgaagaggaaggaaaccaaacataaatcaattttaccaaaagtatattctccat |
41457701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 8 - 172
Target Start/End: Complemental strand, 41441402 - 41441238
Alignment:
| Q |
8 |
tgagctatcaaactagatcttcaagtgtgttcatacaatgaaatacatcgaatttggcgtctttagggagaaaagattcaagattaagcctcatgaatac |
107 |
Q |
| |
|
||||||||||||| ||||||||| |||||| |||||||||||| ||| |||||||| ||||| ||||||| ||||||| || ||| ||| ||||| |
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| T |
41441402 |
tgagctatcaaaccggatcttcaattgtgtttatacaatgaaatgaatcaaatttggcacctttattgagaaaatattcaaggttgagcatcaacaatac |
41441303 |
T |
|
| Q |
108 |
cacgttatgaaagtactattactattggagccaatatctttagacaaatcaaattagcatcaaaa |
172 |
Q |
| |
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||| | || |||||||||||||||| || |||||||||| |||||| ||||||| ||| |||| |
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| T |
41441302 |
cacttgatcaaagtactattactatataagtcaatatcttttgacaaaacaaattatcattaaaa |
41441238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 8 - 57
Target Start/End: Complemental strand, 41458248 - 41458199
Alignment:
| Q |
8 |
tgagctatcaaactagatcttcaagtgtgttcatacaatgaaatacatcg |
57 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41458248 |
tgagctatcaaactagatcttcaagtgtgttcatacaatgaaatacatcg |
41458199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 117; Significance: 2e-59; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 9 - 290
Target Start/End: Original strand, 16418576 - 16418838
Alignment:
| Q |
9 |
gagctatcaaactagatcttcaagtgtgttcatacaatgaaatacatcgaatttggcgtctttagggagaaaagattcaagattaagcctcatgaatacc |
108 |
Q |
| |
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||||||||||||||||||||||||||||||||||| | ||||||||||||| |||| |||||||||| ||||||| ||| | | ||||| | |
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| T |
16418576 |
gagctatcaaactagatcttcaagtgtgttcatac-------ttcatcgaatttggcatcttgagggagaaaatattcaaggttacg--ttatgaacgc- |
16418665 |
T |
|
| Q |
109 |
acgttatgaaagtactattactattggagccaatatctttagacaaatcaaattagcatcaaaattaacaaggtaaagaaattaaggaacttttttatta |
208 |
Q |
| |
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||| ||||||||||||| ||||||||||||||||||||| ||||| ||||||||| |||||||||||||| ||||||||||||||| || | |
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| T |
16418666 |
--------aaattactattactatttgagccaatatctttagacaaaacaaatcagcatcaaacttaacaaggtaaaggaattaaggaacttttgaat-a |
16418756 |
T |
|
| Q |
209 |
ttgaaacttagaaaccagagttacataaattcatctcatatctgtgtaccaaaaacatacacagaagcaaaagaatgccatt |
290 |
Q |
| |
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|||||||||||||||||||| ||||||| |||||||||||| ||||||||||||||||| ||||||||||||||||| |||| |
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| T |
16418757 |
ttgaaacttagaaaccagagctacataagttcatctcatatttgtgtaccaaaaacataaacagaagcaaaagaatgtcatt |
16418838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 273 - 369
Target Start/End: Original strand, 16418858 - 16418954
Alignment:
| Q |
273 |
aagcaaaagaatgccattaacaaatcaaaggagttaaacaactcaaagaaaaaggagaccaaacataaatcaattttaccaaaagtatattctccat |
369 |
Q |
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||||||||||| |||||||||||||||||||||||||||||| |||| ||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
16418858 |
aagcaaaagaacatcattaacaaatcaaaggagttaaacaactcgaagaggaaggaaaccaaacataaatcaattttaccaaaagtatattctccat |
16418954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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