View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4603-Insertion-11 (Length: 378)
Name: NF4603-Insertion-11
Description: NF4603
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4603-Insertion-11 |
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| [»] chr4 (7 HSPs) |
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| [»] scaffold0059 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 335; Significance: 0; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 8 - 378
Target Start/End: Complemental strand, 35646278 - 35645908
Alignment:
| Q |
8 |
gaaattacaagtactggaaccttcccaaaataaagaagcattaaagggccatatttgtgagataaagtgtggagtgtgcggtaaggaaacaaaccaaatt |
107 |
Q |
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| T |
35646278 |
gaaattacaagtactggaaccttcccaaaataaagaagcattaaagggccatatttgtgagataaagtgtggagtgtgcggtaaggaaacaaaccaaatt |
35646179 |
T |
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| Q |
108 |
gatggaggttaccaagtagaggaattcttggaggtgaaggaggtaagnnnnnnnnggtggtagaagaattgttggaattatgccaatattttatgattac |
207 |
Q |
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| T |
35646178 |
gatggaggttaccaagtagaggaattcttggaggtgaaggaggtaagttttttttggtggtagaagaattgttggaattatgccaatattttatgattac |
35646079 |
T |
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| Q |
208 |
aaaaagagaaatgaggaatagtggaaagatagtgaagaaaagcatagggaatgaagagaagatttcatgtgaaagagaacttggcagaaaggtggacatg |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
35646078 |
aaaaagagaaatgaggaatagtggaaagatagtgaagaaaagcatacggaatgaagagaagatttcatgtgaaagagaacttggcagaatggtggacatg |
35645979 |
T |
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| Q |
308 |
gcttaagctttggtttttgttgagtgataaaaaccattctcttccttcttatatatcacttggtgctatga |
378 |
Q |
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| T |
35645978 |
gcttaagctttggtttttgttgagtgataaaaaccactctcttccttcttatatatcacttggtgctatga |
35645908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 26 - 333
Target Start/End: Complemental strand, 35676756 - 35676449
Alignment:
| Q |
26 |
accttcccaaaataaagaagcattaaagggccatatttgtgagataaagtgtggagtgtgcggtaaggaaacaaaccaaattgatggaggttaccaagta |
125 |
Q |
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| T |
35676756 |
accttaccaaaataaagaagcattaaagggccatatttgtgagctaaattttggagtgtgcaatgagggaataagccaagttggtggaggttaccaagta |
35676657 |
T |
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| Q |
126 |
gaggaattcttggaggtgaaggaggtaagnnnnnnnnggtggtagaagaattgttggaattatgccaatattttatgattacaaaaagagaaatgaggaa |
225 |
Q |
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| T |
35676656 |
gaggaaatcttggaggtgaaggaggtaagttttttttggtggcacaagaattgttggaattatgccaatattttatgatggcaaaaagagaaatgaggaa |
35676557 |
T |
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| Q |
226 |
tagtggaaagatagtgaagaaaagcatagggaatgaagagaagatttcatgtgaaagagaacttggcagaaaggtggacatggcttaagctttggttttt |
325 |
Q |
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| T |
35676556 |
tagtggaaagatagtgaagaagagcatagggaatgaagagaagatttcatgtgaaagaaaactttgtagaaatgtggacatggcttaagctttggtttct |
35676457 |
T |
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| Q |
326 |
gttgagtg |
333 |
Q |
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| T |
35676456 |
attgagtg |
35676449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 8 - 378
Target Start/End: Complemental strand, 35655694 - 35655336
Alignment:
| Q |
8 |
gaaattacaagtactggaaccttcccaaaataaagaagcattaaagggccatatttgtgagataaagtgtggagtgtgcggtaaggaaacaaaccaaatt |
107 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| | || ||| ||| ||||| || |
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| T |
35655694 |
gaaactacaagtactggaaccttcccaaaataaagaagcattaaagggccatatttgtgagctaaatcttggagtgatctgtgaggggacacaccaattt |
35655595 |
T |
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| Q |
108 |
gatggaggttaccaagtagaggaattcttggaggtgaaggaggtaagnnnnnnnnggtggtagaagaattgttggaattatgccaatattttatgattac |
207 |
Q |
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| T |
35655594 |
gatgaagattaccaagtataggaaatcttggaggtgaaggtggtaagtttttttgggtggcagaa---ttgttggaat------accatttgatgatgaa |
35655504 |
T |
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| Q |
208 |
aaaaagagaaatgaggaatagtggaaagatagtgaagaaaagcatagggaatgaagagaagatttcatgtgaaagagaacttggcagaaaggtggacatg |
307 |
Q |
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| T |
35655503 |
aagaagtgaaatgaagattggt---aagatagtgaagaaaagcatagggaatgaagagaagatttcctgtgaaagagaactgtgtagaaaggtggacatg |
35655407 |
T |
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| Q |
308 |
gcttaagctttggtttttgttgagtgataaaaaccattctcttccttcttatatatcacttggtgctatga |
378 |
Q |
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| T |
35655406 |
gcttaacctttggtttctgttgagcgataaaaaccactctcttccttcttatatatcacttggtggtatga |
35655336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 14 - 149
Target Start/End: Complemental strand, 35673313 - 35673178
Alignment:
| Q |
14 |
acaagtactggaaccttcccaaaataaagaagcattaaagggccatatttgtgagataaagtgtggagtgtgcggtaaggaaacaaaccaaattgatgga |
113 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||| |||||||| | || | ||||| |||| | | || || |||| |||||||| |
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| T |
35673313 |
acaagtactggaaccttcccaaaataaagaagcactaaagggccatttttgtgagctgaatcttagagtgcacggtgaaggaataagccaagttgatgga |
35673214 |
T |
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| Q |
114 |
ggttaccaagtagaggaattcttggaggtgaaggag |
149 |
Q |
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| T |
35673213 |
agttgccaactagaggaaatcttggaggtgaaggag |
35673178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 231 - 322
Target Start/End: Complemental strand, 35673042 - 35672949
Alignment:
| Q |
231 |
gaaagatagtgaagaaaagcatagggaatgaaga--gaagatttcatgtgaaagagaacttggcagaaaggtggacatggcttaagctttggtt |
322 |
Q |
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|||||| ||||||||||||||||||||||||| | ||| ||||||| ||||||||| || | ||||||||||||||||||||| |||||||| |
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| T |
35673042 |
gaaagacagtgaagaaaagcatagggaatgaatatagaaactttcatgcgaaagagaattttgtagaaaggtggacatggcttaacctttggtt |
35672949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 20 - 154
Target Start/End: Complemental strand, 35641346 - 35641212
Alignment:
| Q |
20 |
actggaaccttcccaaaataaagaagcattaaagggccatatttgtgagataaagtgtggagtgtgcggtaaggaaacaaaccaaattgatggaggttac |
119 |
Q |
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||||| |||||||| |||||||||||||||| ||| ||||| ||||||| |||| ||||||| | || ||| || || | || ||||||||| |||| |
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| T |
35641346 |
actggtaccttccctaaataaagaagcattagaggaccatacttgtgagctaaatcttggagtgatctgtgagggaataagctaacttgatggagattac |
35641247 |
T |
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| Q |
120 |
caagtagaggaattcttggaggtgaaggaggtaag |
154 |
Q |
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| T |
35641246 |
caagtaaagggaatcttggaggtgaaggtggtaag |
35641212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 227 - 297
Target Start/End: Complemental strand, 35641151 - 35641078
Alignment:
| Q |
227 |
agtggaaagatagtgaagaaaagcataggg---aatgaagagaagatttcatgtgaaagagaacttggcagaaa |
297 |
Q |
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| T |
35641151 |
agtggaaagatagtaaagaaaagcatagggagtaatgaatagaacctttcctgtgaaagagaacttggcagaaa |
35641078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0059 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0059
Description:
Target: scaffold0059; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 247 - 343
Target Start/End: Complemental strand, 4274 - 4177
Alignment:
| Q |
247 |
aagcatagggaatgaagagaagatttcatgtgaaagagaacttggcagaaaggtggacatggcttaagctttggtttt-tgttgagtgataaaaacca |
343 |
Q |
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|||||||||||||||| ||||| ||||||| |||||||||| | | |||||||||||||||||||||||||| |||| |||| | |||||||||||| |
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| T |
4274 |
aagcatagggaatgaatagaagctttcatgcgaaagagaacattgtagaaaggtggacatggcttaagctttaattttctgtttaatgataaaaacca |
4177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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