View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4603-Insertion-15 (Length: 168)
Name: NF4603-Insertion-15
Description: NF4603
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4603-Insertion-15 |
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| [»] chr8 (3 HSPs) |
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| [»] scaffold0199 (1 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 153; Significance: 2e-81; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 153; E-Value: 2e-81
Query Start/End: Original strand, 8 - 168
Target Start/End: Original strand, 1887942 - 1888102
Alignment:
| Q |
8 |
ctatattggtcaaatatgatacatataggttttacataccaagagattcatatttgctcccccaaaaggatcagcagccgcagagaaaaatccaagtgag |
107 |
Q |
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| T |
1887942 |
ctatattggtcaaatatgatacatataggttttacataccaagagattcatatttgctcccccaaaaggatcagcagccgcagagaaaaatccaagtgag |
1888041 |
T |
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| Q |
108 |
ctcctcctttcagttctggagaagagtaatccaacatctcttcttcgatatcatgcttatc |
168 |
Q |
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| T |
1888042 |
ctcctcctttcagttctagaggagagtaatccaacatctcttcttcgatatcatgcttatc |
1888102 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 141; E-Value: 3e-74
Query Start/End: Original strand, 8 - 168
Target Start/End: Complemental strand, 1670545 - 1670385
Alignment:
| Q |
8 |
ctatattggtcaaatatgatacatataggttttacataccaagagattcatatttgctcccccaaaaggatcagcagccgcagagaaaaatccaagtgag |
107 |
Q |
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| T |
1670545 |
ctatattggtcaaatatgatacatataggttttacataccaagagattcgtatttgctcccccaaaaggatcagcagccgcagagaaaaatccaagtgag |
1670446 |
T |
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| Q |
108 |
ctcctcctttcagttctggagaagagtaatccaacatctcttcttcgatatcatgcttatc |
168 |
Q |
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| T |
1670445 |
ctcctcctttcagttctacagcggagtaatccaacatctcttcttcgatatcatgcttatc |
1670385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 85; E-Value: 8e-41
Query Start/End: Original strand, 32 - 168
Target Start/End: Original strand, 1891178 - 1891314
Alignment:
| Q |
32 |
ataggttttacataccaagagattcatatttgctcccccaaaaggatcagcagccgcagagaaaaatccaagtgagctcctcctttcagttctggagaag |
131 |
Q |
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| T |
1891178 |
ataggctttatataccaagagatccgtatttgctcccccaaaaggatcaacagctgcggtaacaaatccaagtgacctcctcctttcagctctggaggag |
1891277 |
T |
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| Q |
132 |
agtaatccaacatctcttcttcgatatcatgcttatc |
168 |
Q |
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| T |
1891278 |
agtaatccaacatctcttcttcgatatcatgcttatc |
1891314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0199 (Bit Score: 115; Significance: 1e-58; HSPs: 1)
Name: scaffold0199
Description:
Target: scaffold0199; HSP #1
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 10 - 168
Target Start/End: Complemental strand, 8436 - 8278
Alignment:
| Q |
10 |
atattggtcaaatatgatacatataggttttacataccaagagattcatatttgctcccccaaaaggatcagcagccgcagagaaaaatccaagtgagct |
109 |
Q |
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| T |
8436 |
atattagtaaaatatgatacataggtgtattacataccaatagattcgtatttgctcccccaaaaggatcagcagccgcggagaaaaatccaagtgagct |
8337 |
T |
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| Q |
110 |
cctcctttcagttctggagaagagtaatccaacatctcttcttcgatatcatgcttatc |
168 |
Q |
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| T |
8336 |
cctcctttcagttctggagaagagtaacccaacatctcttctttgatatcatgcttatc |
8278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 107; Significance: 6e-54; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 107; E-Value: 6e-54
Query Start/End: Original strand, 26 - 168
Target Start/End: Original strand, 5996790 - 5996932
Alignment:
| Q |
26 |
atacatataggttttacataccaagagattcatatttgctcccccaaaaggatcagcagccgcagagaaaaatccaagtgagctcctcctttcagttctg |
125 |
Q |
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|||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||| || || | |||||||||||||| ||||||||||| |||| |
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| T |
5996790 |
atacgtataggttttacataccaagagatccatatttgctcccccaaaaggatcagcagctgcggaaacaaatccaagtgagcacctcctttcagctctg |
5996889 |
T |
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| Q |
126 |
gagaagagtaatccaacatctcttcttcgatatcatgcttatc |
168 |
Q |
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| T |
5996890 |
gaggagagtaatccaacatctcttcttcgatatcatgcttatc |
5996932 |
T |
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