View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4603-Insertion-16 (Length: 106)
Name: NF4603-Insertion-16
Description: NF4603
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4603-Insertion-16 |
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| [»] chr5 (1 HSPs) |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 91; Significance: 1e-44; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 91; E-Value: 1e-44
Query Start/End: Original strand, 8 - 106
Target Start/End: Complemental strand, 39184843 - 39184745
Alignment:
| Q |
8 |
gtgtttcgtcttcctatagatatgttttgtgttgctgtctgttttcttggtgaggcggtttggcagcgtagttttggctctatcgttggcttgtgggta |
106 |
Q |
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| T |
39184843 |
gtgtttcgtcttcctatatatatgttttgtgttgctgtctgttttcttggtgaggcggtttggcggcgtagttttggctctatcgttggcttgtgggta |
39184745 |
T |
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Target: chr1 (Bit Score: 47; Significance: 2e-18; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 2e-18
Query Start/End: Original strand, 8 - 106
Target Start/End: Original strand, 42373584 - 42373681
Alignment:
| Q |
8 |
gtgtttcgtcttcctatagatatgttttgtgttgctgtctgttttcttggtgaggcggtttggcagcgtagttttggctctatcgttggcttgtgggta |
106 |
Q |
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| T |
42373584 |
gtgtttcgtcttcctatcgatctgttctatgttactgcctgttttcttggtgaggtggtttgacggcgtagttttgtctctatctttgg-ttgtgggta |
42373681 |
T |
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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.0000000005
Query Start/End: Original strand, 11 - 82
Target Start/End: Original strand, 17032922 - 17032996
Alignment:
| Q |
11 |
tttcgtcttcctatagatatgtt---ttgtgttgctgtctgttttcttggtgaggcggtttggcagcgtagtttt |
82 |
Q |
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| T |
17032922 |
tttcgtcttcctctagatatgtgatattatgttgctgcttgttttcttggtgagacggtttggcagtgtagtttt |
17032996 |
T |
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Target: chr3 (Bit Score: 37; Significance: 0.000000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000002
Query Start/End: Original strand, 9 - 92
Target Start/End: Complemental strand, 25595204 - 25595121
Alignment:
| Q |
9 |
tgtttcgtcttcctatagatatgtttt-gtgttgctgtctgttttcttggtgaggcggtttggcagcgtagttttggctctatcg |
92 |
Q |
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| T |
25595204 |
tgtttcgtcatcctctagatttgtttttgtgttgctgcttgttt-cttggtgaggcggtttggcaacgtagtttcgtctctatcg |
25595121 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 106
Target Start/End: Original strand, 5556047 - 5556131
Alignment:
| Q |
23 |
atagatatgt-tttgtgttgctgtctgttttcttggtgaggcggtttggcagcgtagttttggctctatcgttggcttgtgggta |
106 |
Q |
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| T |
5556047 |
atagatatgtgtttgtgttgctgcttgttttcatggtgtggcggttaggctgcattgttttgtctctgtcgctggtttgtgggta |
5556131 |
T |
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Target: chr4 (Bit Score: 31; Significance: 0.000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.000000008
Query Start/End: Original strand, 33 - 71
Target Start/End: Original strand, 16501262 - 16501300
Alignment:
| Q |
33 |
tttgtgttgctgtctgttttcttggtgaggcggtttggc |
71 |
Q |
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| T |
16501262 |
tttgtgtggccgtctgttttcttggtgaggcggtttggc |
16501300 |
T |
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