View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4603-Insertion-5 (Length: 620)
Name: NF4603-Insertion-5
Description: NF4603
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4603-Insertion-5 |
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Alignment Details
Target: chr3 (Bit Score: 143; Significance: 8e-75; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 143; E-Value: 8e-75
Query Start/End: Original strand, 148 - 331
Target Start/End: Original strand, 54470630 - 54470813
Alignment:
| Q |
148 |
tctctcatatttataggcaaatgttannnnnnnagattcattgaatgattgatgtatctttactataatgtagtctaggtgcacatgttatttattgaat |
247 |
Q |
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| T |
54470630 |
tctctcatatttataggcaaatgttattttttgagattcattgaataattgatgtatctttactataatgtagtctagatgcacatgttatttattgaat |
54470729 |
T |
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| Q |
248 |
cctaaaaatgaatagttgtttatacatgtgatcggagagagtatatacaaaaagatatgggcaaataattaagaactaaagtgt |
331 |
Q |
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| T |
54470730 |
cttaaaaatgaatagttgtttatatatgtgatcggagaaagtatatacaaaaagatatgggcaaataattaagaactaaagtgt |
54470813 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 427 - 598
Target Start/End: Original strand, 54470905 - 54471076
Alignment:
| Q |
427 |
gtgagggaccattcgatatcaaatttagtcttcatgcttnnnnnnntgaagtagatgaaaatctgcatttttattattattattaagagggatcaaaaga |
526 |
Q |
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| T |
54470905 |
gtgagggaccatacgatatcaaatttagtcttcatgcttaaaaaaatgaagtagatgaaaatttgcatttttattattattattatgagggatcaaaaga |
54471004 |
T |
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| Q |
527 |
gctctctggttttttgtgagggaccgtacgagatctcaaatgaaatgaagttggcttattccccccactttt |
598 |
Q |
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| T |
54471005 |
gctctctggttttttgtgagggaccgtacgagatctcaaatgaaatgaagttggcttattccccccactttt |
54471076 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 7 - 119
Target Start/End: Original strand, 54470461 - 54470573
Alignment:
| Q |
7 |
aataactagggtttgtcatcaatttctagcaaattaccatagggtttctcttaggtcggtgagaaaacgtgtcacaactcacagggttgcccatgaaatt |
106 |
Q |
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| T |
54470461 |
aataactagggtttgtcatcaatttctagcaaattaccatagggtttctcttaggtcggtgagaaaacgtgtcacaactcacaggcttgcccatgaaatt |
54470560 |
T |
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| Q |
107 |
gcaaaatgggcag |
119 |
Q |
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| T |
54470561 |
gcaaaatgggcag |
54470573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 181 - 230
Target Start/End: Complemental strand, 32776439 - 32776390
Alignment:
| Q |
181 |
agattcattgaatgattgatgtatctttactataatgtagtctaggtgca |
230 |
Q |
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| T |
32776439 |
agattcattgaatgattattgcatctttactataatgtagtttagatgca |
32776390 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 261 - 293
Target Start/End: Original strand, 24970873 - 24970905
Alignment:
| Q |
261 |
agttgtttatacatgtgatcggagagagtatat |
293 |
Q |
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| T |
24970873 |
agttgtttataaatgtgatcggagagagtatat |
24970905 |
T |
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