View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4603-Insertion-6 (Length: 564)
Name: NF4603-Insertion-6
Description: NF4603
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4603-Insertion-6 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 526; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 526; E-Value: 0
Query Start/End: Original strand, 7 - 564
Target Start/End: Complemental strand, 7533965 - 7533408
Alignment:
| Q |
7 |
atatctatgacaatatttaaaggggatacactcatttgggttggaatttttctttcatatttacccttaatgcaaattcctggaccaatcttattctcac |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
7533965 |
atatctatgacaatatttaaaggggatacactcatttgggttggaatttttctttcatatttacccttgatgcaaattcctggaccaatcttattctcac |
7533866 |
T |
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| Q |
107 |
cattaggaaaagatgcatcaatgttgcatttcattcgtcctctgctcggcttagaccatttaattagatggggtagttgtgcttgtgacctactgttcat |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
7533865 |
cattaggaaaagatgcatcaatgttgcatttcattcgtcctctgctcggcttagaccatttaattagatggggtagttgtgcttgtgacctaatgttcat |
7533766 |
T |
|
| Q |
207 |
aacattattaaggctcaattttttctttccagctaattcccagtcaaaaagcaaggatttcgctcgctctagaacaaagctttatgcatccacaatatcg |
306 |
Q |
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||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7533765 |
aacattattaaggctcaatttgttctttccagctaattcccaatcaaaaagcaaggatttcgctcgctctagaacaaagctttatgcatccacaatatcg |
7533666 |
T |
|
| Q |
307 |
ttccagaccttattgttacgttgcttccagatgctccataaaacacaagcaaaaaagcgctgcctcgctgttggacagcacctgcaaacttttaaaaata |
406 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
7533665 |
ttccagaccttattgttacgttgcttccagatgctccataacacacaagcaaaaaagcgctgcctcgcggttggacagcacctgcaaacttttaaaaata |
7533566 |
T |
|
| Q |
407 |
ataccactacaatccaaaccttgattcaacattgtgctaatagttgtacccaacccgacatgttccgcatattgatgctactaggactggtaaagaagag |
506 |
Q |
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| T |
7533565 |
ataccactacaatccaaaccttgattcaacattgtgctaatagttgtacccaacccgacatgttccgcatattgatgctactaggactggtaaagaagag |
7533466 |
T |
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| Q |
507 |
atgaagactgttctcttcatctgaattgcaaagaacacaatgtgatagacaattaacc |
564 |
Q |
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| T |
7533465 |
atgaagactgttctcttcatctgaattgcaaagaacacaatgtgttagaaaattaacc |
7533408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 76 - 564
Target Start/End: Original strand, 24448632 - 24449120
Alignment:
| Q |
76 |
atgcaaattcctggaccaatcttattctcaccattaggaaaagatgcatcaatgttgcatttcattcgtcctctgctcggcttagaccatttaattagat |
175 |
Q |
| |
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| T |
24448632 |
atgcaaattcctatactagtcttattctcaccattaggaaa-gatgcatcaatgttgcatttcatttatcctctgttcggtctagaccatttaattagac |
24448730 |
T |
|
| Q |
176 |
ggggtagttgtgcttgtgacctactgttcataacattattaaggctcaattttttctttccagctaattcccagtcaaaaagcaaggatttcgctcgctc |
275 |
Q |
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|| |||| ||||||||||||||| ||||| ||||||||||||| |||||||| ||||||| |||||||||||||||||||||||||||||| |||||||| |
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| T |
24448731 |
ggcgtagctgtgcttgtgacctaatgttcgtaacattattaagactcaatttgttctttcgagctaattcccagtcaaaaagcaaggatttagctcgctc |
24448830 |
T |
|
| Q |
276 |
tagaacaaagctttatgcatccacaatatcgttccagaccttattgttacgttgcttccagatgctccataaaa-cacaagcaaaaaagcgctgcctcgc |
374 |
Q |
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| |||||||||||||||||| ||||||||| | ||| |||||||||||| ||||||||||||| |||||||||| |||||||||||| |||||||| |
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| T |
24448831 |
ttgaacaaagctttatgcatgcacaatatcatcccataccttattgttatgttgcttccagatactccataaaaacacaagcaaaaattta-tgcctcgc |
24448929 |
T |
|
| Q |
375 |
tgttggacagcacctgcaaacttttaaaaataataccactacaatccaaaccttgattcaacattgtgctaatagttgtacccaac-ccgacatgttccg |
473 |
Q |
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|||| |||| |||||||||||| || ||||| ||||||||||||||||||||||||| ||||||||||||||||| |||||||||| |||||||||||| |
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| T |
24448930 |
tgttagacaacacctgcaaactattgaaaatcataccactacaatccaaaccttgatacaacattgtgctaatagatgtacccaactccgacatgttcca |
24449029 |
T |
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| Q |
474 |
catattgatgctactaggactggtaaagaagagatgaagactgttctcttcatctgaattgcaaagaacacaatgtgatagacaattaacc |
564 |
Q |
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|| || ||||| |||| || ||||| || ||||||| | |||| ||||||||| ||||||| ||||||||||||| | ||||||||||| |
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| T |
24449030 |
cactttaatgctgctagtacgagtaaataaaagatgaacattgttttcttcatctaaattgcagagaacacaatgtgttggacaattaacc |
24449120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 108 - 170
Target Start/End: Original strand, 19934274 - 19934336
Alignment:
| Q |
108 |
attaggaaaagatgcatcaatgttgcatttcattcgtcctctgctcggcttagaccatttaat |
170 |
Q |
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||||||||| ||||||||||| || ||||||||||| ||||| |||||||| ||||||||| |
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| T |
19934274 |
attaggaaacgatgcatcaatattacatttcattcgacctctattcggcttactccatttaat |
19934336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 108 - 170
Target Start/End: Original strand, 20351578 - 20351640
Alignment:
| Q |
108 |
attaggaaaagatgcatcaatgttgcatttcattcgtcctctgctcggcttagaccatttaat |
170 |
Q |
| |
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||||||||| ||||||||||| || ||||||||||| ||||| |||||||| ||||||||| |
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| T |
20351578 |
attaggaaacgatgcatcaatattacatttcattcgacctctattcggcttactccatttaat |
20351640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 108 - 170
Target Start/End: Complemental strand, 42311669 - 42311607
Alignment:
| Q |
108 |
attaggaaaagatgcatcaatgttgcatttcattcgtcctctgctcggcttagaccatttaat |
170 |
Q |
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||||||||| ||||||||||| || ||||||||||| ||||| |||||||| ||||||||| |
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| T |
42311669 |
attaggaaacgatgcatcaatattacatttcattcgacctctattcggcttactccatttaat |
42311607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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