View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4603-Insertion-7 (Length: 554)
Name: NF4603-Insertion-7
Description: NF4603
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4603-Insertion-7 |
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| [»] chr4 (1 HSPs) |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 482; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 482; E-Value: 0
Query Start/End: Original strand, 10 - 554
Target Start/End: Complemental strand, 49004941 - 49004396
Alignment:
| Q |
10 |
tacattgactaatcattacgagtaagctgaggtacatatcgagcattttgcagaagagcattggcttcctcatttgaggcatcgagtgcacggagttctt |
109 |
Q |
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||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
49004941 |
tacattgactaatcattacgagtgagctgaagtacatatcgagcattttgcagaagagcattggcttcctcatttgaggcatcgagtgctcggagttctt |
49004842 |
T |
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| Q |
110 |
tgatttcttcctgccatttttcaacctgctccttgtgaatcctgcttatttgaaagttaaaagaatcacaccataaaaagtcaaaaactaacaatattta |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49004841 |
tgatttcttcctgccatttttcaacctgctccttgtgaatcctgcttatttgaaagttaaaagaatcacaccataaaaagtcaaaaactaacaatattta |
49004742 |
T |
|
| Q |
210 |
a-gtgaaagatagtttaaacattgaatgttcaatggtaacttcattactcacataatcagtttctcttcaaattcattgcatagctccttaaacattgtt |
308 |
Q |
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| T |
49004741 |
aagtgaaagatagtttaaacattgaatgttcaatggtaacttcataactcacataatcagtttctcttcaaattcattgcatagctccttaagcattgtt |
49004642 |
T |
|
| Q |
309 |
ttccctgattccaagagctcagatacctacacgaaatccacaattaaacatttcaaagatttaacattcatctagagtatgatttcaagtttcaaacagc |
408 |
Q |
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|||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| |
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| T |
49004641 |
ttccctgattccaaaagctcagatacctacaagaaatccacaattaaacatttcaaagatttaacattcatctagcttatgatttcaagcttcaaacagt |
49004542 |
T |
|
| Q |
409 |
gtgtaagtgtaactttatatagctaccctctgggtaaaattctcaatcttctcaagaacaagagaaatattgagctccatttcttcagacccaacttggt |
508 |
Q |
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||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
49004541 |
gtgtaagtgtaacattatatagctaccctctgagtaaaattctcaatcttctcaagaacaagagaaatattcagctccatttcttcagacccaacttggt |
49004442 |
T |
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| Q |
509 |
tagtctcaaatccttcctcctgtacaagtacaatctgcgattctgc |
554 |
Q |
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| T |
49004441 |
tagtctcaaatccttcctcctgtacaagtacaatctgcgattctgc |
49004396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 422; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 10 - 554
Target Start/End: Complemental strand, 38160964 - 38160419
Alignment:
| Q |
10 |
tacattgactaatcattacgagtaagctgaggtacatatcgagcattttgcagaagagcattggcttcctcatttgaggcatcgagtgcacggagttctt |
109 |
Q |
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||||||||||||||||| ||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| |
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| T |
38160964 |
tacattgactaatcatttcgagtgagctgaagtacatatcgagcattttgcagaagagcattggcttcctcatttgaggcatcaagtgcacgcagttctt |
38160865 |
T |
|
| Q |
110 |
tgatttcttcctgccatttttcaacctgctccttgtgaatcctgcttatttgaaagttaaaagaatcacaccataaaaagtcaaaaactaacaatattta |
209 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||| |||| ||||||||||||||| |||||| |||||||||||||||||||||||| | |
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| T |
38160864 |
tgatttcttcctgccatttttcgacctgctccttgtgaatcctgcatattggaaagttaaaagaataacaccacaaaaagtcaaaaactaacaatattaa |
38160765 |
T |
|
| Q |
210 |
a-gtgaaagatagtttaaacattgaatgttcaatggtaacttcattactcacataatcagtttctcttcaaattcattgcatagctccttaaacattgtt |
308 |
Q |
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| |||||||||||||| | | |||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
38160764 |
aagtgaaagatagtttcagctttgaatgttcaatggtaacttcataactcgcataatcagtttctcttcaaattcattgcatagctccttaagcattgtt |
38160665 |
T |
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| Q |
309 |
ttccctgattccaagagctcagatacctacacgaaatccacaattaaacatttcaaagatttaacattcatctagagtatgatttcaagtttcaaacagc |
408 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| |
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| T |
38160664 |
ttccctgattccaagagctcagatacctacaagaaatccacaattaaacatttcaaagatttaacattcatctacagtatgatttcaagcttcaaacagt |
38160565 |
T |
|
| Q |
409 |
gtgtaagtgtaactttatatagctaccctctgggtaaaattctcaatcttctcaagaacaagagaaatattgagctccatttcttcagacccaacttggt |
508 |
Q |
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||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| |||||||| |||||||||| ||||| |
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| T |
38160564 |
gtgtaggtgtaactttatatagctaccctctgagtaaaattctcaatcttctcaagaacaagagaaacattgagttccatttcctcagacccaatttggt |
38160465 |
T |
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| Q |
509 |
tagtctcaaatccttcctcctgtacaagtacaatctgcgattctgc |
554 |
Q |
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| T |
38160464 |
tagtctcaaatccttcctcctgtacaagcacaatctgtgattctgc |
38160419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 8 - 381
Target Start/End: Complemental strand, 38117140 - 38116767
Alignment:
| Q |
8 |
attacattgactaatcattacgagtaagctgaggtacatatcgagcattttgcagaagagcattggcttcctcatttgaggcatcgagtgcacggagttc |
107 |
Q |
| |
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||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38117140 |
attacattgactaatcattacgagtgagctgaagtacatatcgagcattttgcagaagagcattggcttcctcatttgaggcatcgagtgcacggagttc |
38117041 |
T |
|
| Q |
108 |
tttgatttcttcctgccatttttcaacctgctccttgtgaatcctgcttatttgaaagttaaaagaatcacaccataaaaagtcaaaaactaacaatatt |
207 |
Q |
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| T |
38117040 |
tttgatttcttcctgccatttttcaacctgctccttgtgaatcctgcttatttgaaagttaaaagaatcacaccataaaaagtcaaaaactaacaatatt |
38116941 |
T |
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| Q |
208 |
taagtgaaagatagtttaaacattgaatgttcaatggtaacttcattactcacataatcagtttctcttcaaattcattgcatagctccttaaacattgt |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38116940 |
taagtgaaagatagtttaaacattgaatgttcaatggtaacttcattactcacataatcagtttctcttcaaattcattgcatagctccttaaacattgt |
38116841 |
T |
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| Q |
308 |
tttccctgattccaagagctcagatacctacacgaaatccacaattaaacatttcaaagatttaacattcatct |
381 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
38116840 |
tttccctgattccaagagctcagatacctacatgaaatccacaattaaacatttcaaagatttaacattcatct |
38116767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 409 - 554
Target Start/End: Complemental strand, 38116760 - 38116615
Alignment:
| Q |
409 |
gtgtaagtgtaactttatatagctaccctctgggtaaaattctcaatcttctcaagaacaagagaaatattgagctccatttcttcagacccaacttggt |
508 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38116760 |
gtgtaagtgtaactttatatagctaccctctgggtaaaattctcaatcttctcaagaacaagagaaatattgagctccatttcttcagacccaacttggt |
38116661 |
T |
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| Q |
509 |
tagtctcaaatccttcctcctgtacaagtacaatctgcgattctgc |
554 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38116660 |
tagtctcaaatccttcctcctgtacaagtacaatctgcgattctgc |
38116615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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