View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4603-Insertion-8 (Length: 501)
Name: NF4603-Insertion-8
Description: NF4603
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4603-Insertion-8 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 365; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 7 - 501
Target Start/End: Complemental strand, 26701246 - 26700753
Alignment:
| Q |
7 |
aaaaagatggatgtatatgatttttattctttataacaaattaagataactccaaaccgcaaattataatgcattgtttaatttttnnnnnnngtttcga |
106 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
26701246 |
aaaaagatggatggatatgatttttattctttataacaaattaagataactccaaaccgcaaattataatgcattgtttaatttttaaaaaaagtttcga |
26701147 |
T |
|
| Q |
107 |
attattctcccaaacttgttgtccaccctcaatataaaatctttttatatatccatattccgttgaaatcttgttatatatccatatatctttcgtgcac |
206 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26701146 |
attattctcccaaacttgttgtcaaccctcaatataaaatcttgttatatatccatattccgttgaaatcttgttatatatccatatatctttcgtgcac |
26701047 |
T |
|
| Q |
207 |
gcaaatgtggagactaatttttcaaatatcgtgggatccaaatggatgacaagctctccctgttatatatttaagtctggattcaaacccaaaactttgg |
306 |
Q |
| |
|
||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| ||| ||||||||||||| |||||||||||||||||||| |
|
|
| T |
26701046 |
gcaaatgtggagactaatttttcgagtatcgtgggatccaaatggatgacaagctctccctattacatatttaagtctgaattcaaacccaaaactttgg |
26700947 |
T |
|
| Q |
307 |
ttaagctaaaaaagacctatttgaaattgtctannnnnnnnnnnnnnnnacagaatgaaattgtctctttatctaaacacttgtgagattgtttgatgga |
406 |
Q |
| |
|
|||||||||||||||||| ||| ||||| |||| | ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26700946 |
ttaagctaaaaaagacctgtttaaaattatcta-tttatatatttttttatagaatgaaattgtctctttatctaaacacttgtgagattgtttgatgga |
26700848 |
T |
|
| Q |
407 |
actatatccatatccataaaatgtttcagtttattttcaagaattatttggatatatagtttataaaaatagtttgagtaaggtgactttattca |
501 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
26700847 |
actatatccatatccataaaatgtttcagtttattttcatgaattatttggatatatagtttataaaaatagtttgagtaagttgactttattca |
26700753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University