View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4603_high_1 (Length: 645)
Name: NF4603_high_1
Description: NF4603
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4603_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 335; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 215 - 642
Target Start/End: Original strand, 13299620 - 13300041
Alignment:
| Q |
215 |
caacgtaacctgcaaccataatttaaaatcatggttgcggtcacattacaaatcttgatatatcatgcataatttctgtcaaatttaacagattttgcgc |
314 |
Q |
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|||||||||| | ||||| |||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13299620 |
caacgtaaccag-aaccacaatttaaaatcagggttgcggtcacattgcaaatcttgatatatcatgcataatttctgtcaaatttaacagattttgc-- |
13299716 |
T |
|
| Q |
315 |
aatctcaacgtggtcgcggaaacatcaaaaactccatgccaggatcgataacaattgcggccagccggccacggatagtgttcctaaacaaaattatatt |
414 |
Q |
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|||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
13299717 |
aatctcaacgtggtcgcggaaacatcaaaaactctatgtcaggatcgataacaattgcggccagccggccacggatagtgttcctaaacaaaattagttt |
13299816 |
T |
|
| Q |
415 |
tgatgatggcattgttgaagatacataaactataaggtacttgtttgtgattccaacagataaactttgtcgttagtgagaacatgaagttaggccaatg |
514 |
Q |
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|||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
13299817 |
tgatgatggcattgttgaagttacataaacaataaggtacttgtttgtgattccaactgataaactttgtcgttagtgagaacatgaagttaggccaatg |
13299916 |
T |
|
| Q |
515 |
acagcatagtatagagaaaaagcattgatcatggtgtaccaaacttgaactttagttaaaaaatctctaacacttattcaaacaaagggtatagaaggtg |
614 |
Q |
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|||||| ||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13299917 |
acagcacagtatagagcaaaagcat---tcatggtgtaccaaacttgaactttagttaaaaaatctctaacacttattcaaacaaagggtatagaaggtg |
13300013 |
T |
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| Q |
615 |
actcaatagacttgtcctttgcttctgc |
642 |
Q |
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| T |
13300014 |
actcaatagacttgtccttggattctgc |
13300041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 153; E-Value: 9e-81
Query Start/End: Original strand, 18 - 202
Target Start/End: Original strand, 13299387 - 13299571
Alignment:
| Q |
18 |
cacccatatcatcacccatcatttttgtatcaaaattcctttctgttacaaagtttatttagttccgtgctagctctagagggtttaaaagaccgattat |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| |
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| T |
13299387 |
cacccatatcatcacccatcatttttgtatcaaaattcctttctgttacaaagtttatttagttgattgctagctctagagggtttaaaataccgattat |
13299486 |
T |
|
| Q |
118 |
tttatcgtatggttttaaattgcagtctgcaaccgcaattgtgtctgttacataaagaattttgaagtctccgcaacagtgtaac |
202 |
Q |
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|||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| ||||||| ||||| |
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| T |
13299487 |
tttatcgtatggttttaaattgcagtctgcaatcacaattgtgtctgttacataaagaattttgaagtctctgcaacagcgtaac |
13299571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 124 - 155
Target Start/End: Original strand, 32168709 - 32168740
Alignment:
| Q |
124 |
gtatggttttaaattgcagtctgcaaccgcaa |
155 |
Q |
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| T |
32168709 |
gtatggttttaaattgcagtctgcaaccgcaa |
32168740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 126 - 158
Target Start/End: Original strand, 8433844 - 8433876
Alignment:
| Q |
126 |
atggttttaaattgcagtctgcaaccgcaattg |
158 |
Q |
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| T |
8433844 |
atggttttaaattgcagtctgcaaccgtaattg |
8433876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 126 - 193
Target Start/End: Original strand, 37281036 - 37281103
Alignment:
| Q |
126 |
atggttttaaattgcagtctgcaaccgcaattgtgtctgttacataaagaattttgaagtctccgcaa |
193 |
Q |
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|||||||||||||||||||||||||| |||||||| | | | ||||| ||||||||||||| |||| |
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| T |
37281036 |
atggttttaaattgcagtctgcaaccccaattgtggccgcaatataaaatattttgaagtctctgcaa |
37281103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 167 - 195
Target Start/End: Complemental strand, 13416483 - 13416455
Alignment:
| Q |
167 |
acataaagaattttgaagtctccgcaaca |
195 |
Q |
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| T |
13416483 |
acataaagaattttgaagtctccgcaaca |
13416455 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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