View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4603_high_17 (Length: 227)
Name: NF4603_high_17
Description: NF4603
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4603_high_17 |
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| [»] chr8 (9 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 203; Significance: 1e-111; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 15313220 - 15313446
Alignment:
| Q |
1 |
tttccagtttccccaacattcagtgagtcctccagataaatggttatcagagacatccaagaacattaaattggtgttctctatcatattatggcataac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15313220 |
tttccagtttccccaacattcagtgagtcctccagataaatggttatcagagacatccaagaacattaaattggtgttctctatcatattatggcataac |
15313319 |
T |
|
| Q |
101 |
agatgagaaagaggtccagtcaaattgttagaacttattttgaaaacactcacatttgaagttaattgaggaaggccaccactcaaaccattatcaatca |
200 |
Q |
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||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15313320 |
agatgagaaagaggtccagtcaaattgttgaaacttaaattgaaaacactcacatttgaagttaattgaggaaggccaccactcaaaccattatcaatca |
15313419 |
T |
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| Q |
201 |
aacatgtaactttagagtttaacaaca |
227 |
Q |
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| T |
15313420 |
accatgtaactttagaatttaacaaca |
15313446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 15493589 - 15493815
Alignment:
| Q |
1 |
tttccagtttccccaacattcagtgagtcctccagataaatggttatcagagacatccaagaacattaaattggtgttctctatcatattatggcataac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15493589 |
tttccagtttccccaacattcagtgagtcctccagataaatggttatcagagacatccaagaacattaaattggtgttctctatcatattatggcataac |
15493688 |
T |
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| Q |
101 |
agatgagaaagaggtccagtcaaattgttagaacttattttgaaaacactcacatttgaagttaattgaggaaggccaccactcaaaccattatcaatca |
200 |
Q |
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| T |
15493689 |
agatgagaaagaggtccagtcaaattgttgaaacttaaattgaaaacactcacatttgaagttaattgaggaaggccaccactcaaaccattatcaatca |
15493788 |
T |
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| Q |
201 |
aacatgtaactttagagtttaacaaca |
227 |
Q |
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| T |
15493789 |
accatgtaactttagaatttaacaaca |
15493815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 5 - 227
Target Start/End: Original strand, 15446106 - 15446328
Alignment:
| Q |
5 |
cagtttccccaacattcagtgagtcctccagataaatggttatcagagacatccaagaacattaaattggtgttctctatcatattatggcataacagat |
104 |
Q |
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||||| |||||||||||||||||||||||||| |||| |||||||||||| |||||| |||| ||||||||||||||| ||||||||||||||||||||| |
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| T |
15446106 |
cagttcccccaacattcagtgagtcctccagacaaattgttatcagagacgtccaagtacatcaaattggtgttctctttcatattatggcataacagat |
15446205 |
T |
|
| Q |
105 |
gagaaagaggtccagtcaaattgttagaacttattttgaaaacactcacatttgaagttaattgaggaaggccaccactcaaaccattatcaatcaaaca |
204 |
Q |
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|||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || |
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| T |
15446206 |
gagaaagaggcccagtcaaattgttagaaattattttgaaaacactcacatttgaagttaattgaggaaggccaccactcaaaccattatcaaccaacca |
15446305 |
T |
|
| Q |
205 |
tgtaactttagagtttaacaaca |
227 |
Q |
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|| ||||| ||| |||||||||| |
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| T |
15446306 |
tgcaacttcagaatttaacaaca |
15446328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 194
Target Start/End: Original strand, 15283852 - 15284045
Alignment:
| Q |
1 |
tttccagtttccccaacattcagtgagtcctccagataaatggttatcagagacatccaagaacattaaattggtgttctctatcatattatggcataac |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| || ||| ||| |||| || | ||||| | |||||| | |||||||| ||||| |
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| T |
15283852 |
tttccagtttccccaacattcagtgagtcctccagataaatgattgtcaatgacggacaagtacttcaaattacttttctctttaatattatgacataag |
15283951 |
T |
|
| Q |
101 |
agatgagaaagaggtccagtcaaattgttagaacttattttgaaaacactcacatttgaagttaattgaggaaggccaccactcaaaccattat |
194 |
Q |
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||||||||||| | |||| || ||||||| | |||| || |||| ||||||||||| ||||||| ||||||||| ||||||||||||||||| |
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| T |
15283952 |
agatgagaaagggacccagacatattgttaccatttatattaaaaatactcacatttgtagttaatcgaggaaggctaccactcaaaccattat |
15284045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 194
Target Start/End: Original strand, 15464221 - 15464414
Alignment:
| Q |
1 |
tttccagtttccccaacattcagtgagtcctccagataaatggttatcagagacatccaagaacattaaattggtgttctctatcatattatggcataac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| || ||| ||| |||| || | ||||| | |||||| | |||||||| ||||| |
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| T |
15464221 |
tttccagtttccccaacattcagtgagtcctccagataaatgattgtcaatgacggacaagtacttcaaattacttttctctttaatattatgacataag |
15464320 |
T |
|
| Q |
101 |
agatgagaaagaggtccagtcaaattgttagaacttattttgaaaacactcacatttgaagttaattgaggaaggccaccactcaaaccattat |
194 |
Q |
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||||||||||| | |||| || ||||||| | |||| || |||| ||||||||||| ||||||| ||||||||| ||||||||||||||||| |
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| T |
15464321 |
agatgagaaagggacccagacatattgttaccatttatattaaaaatactcacatttgtagttaatcgaggaaggctaccactcaaaccattat |
15464414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 189
Target Start/End: Original strand, 15302355 - 15302543
Alignment:
| Q |
1 |
tttccagtttccccaacattcagtgagtcctccagataaatggttatcagagacatccaagaacattaaattggtgttctctatcatattatggcataac |
100 |
Q |
| |
|
|||||||||| |||||||||||||||| ||||||||||| |||||| | |||| |||| || | |||||| | || ||||||| || |||||||| |
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| T |
15302355 |
tttccagtttacccaacattcagtgagccctccagataataggttattatggacactcaagtacttcaaattgctttttcctatcattttttggcataag |
15302454 |
T |
|
| Q |
101 |
agatgagaaagaggtccagtcaaattgttagaacttattttgaaaacactcacatttgaagttaattgaggaaggccaccactcaaacc |
189 |
Q |
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||| ||||||||| |||||||||||||||| | ||| | |||||||||||||||||||||| | |||||||||||||||||||||| |
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| T |
15302455 |
agaggagaaagagatccagtcaaattgttataggctatctcaaaaacactcacatttgaagttagtcgaggaaggccaccactcaaacc |
15302543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 189
Target Start/End: Original strand, 15482724 - 15482912
Alignment:
| Q |
1 |
tttccagtttccccaacattcagtgagtcctccagataaatggttatcagagacatccaagaacattaaattggtgttctctatcatattatggcataac |
100 |
Q |
| |
|
|||||||||| |||||||||||||||| ||||||||||| |||||| | |||| |||| || | |||||| | || ||||||| || |||||||| |
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| T |
15482724 |
tttccagtttacccaacattcagtgagccctccagataataggttattatggacactcaagtacttcaaattgctttttcctatcattttttggcataag |
15482823 |
T |
|
| Q |
101 |
agatgagaaagaggtccagtcaaattgttagaacttattttgaaaacactcacatttgaagttaattgaggaaggccaccactcaaacc |
189 |
Q |
| |
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||| ||||||||| |||||||||||||||| | ||| | |||||||||||||||||||||| | |||||||||||||||||||||| |
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| T |
15482824 |
agaggagaaagagatccagtcaaattgttataggctatctcaaaaacactcacatttgaagttagtcgaggaaggccaccactcaaacc |
15482912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 193
Target Start/End: Original strand, 15297597 - 15297789
Alignment:
| Q |
1 |
tttccagtttccccaacattcagtgagtcctccagataaatggttatcagagacatccaagaacattaaattggtgttctctatcatattatggcataac |
100 |
Q |
| |
|
|||||||||| |||| |||||| ||||| |||||||||||| || ||| ||||| | ||| | | ||||| | ||||||||||||||||| ||||| |
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| T |
15297597 |
tttccagtttatccaatattcagcgagtcatccagataaatgattttcatagacaacgaagtatttcaaattacttttctctatcatattatgacataag |
15297696 |
T |
|
| Q |
101 |
agatgagaaagaggtccagtcaaattgttagaacttattttgaaaacactcacatttgaagttaattgaggaaggccaccactcaaaccatta |
193 |
Q |
| |
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|| |||||||| | || | || ||||||| | |||| | |||| | |||||||||||||||| ||||||||| |||||| ||||||||| |
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| T |
15297697 |
aggtgagaaagggacccggacatattgttaccatttatatcaaaaataaccacatttgaagttaatcgaggaaggctaccacttaaaccatta |
15297789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 193
Target Start/End: Original strand, 15477966 - 15478158
Alignment:
| Q |
1 |
tttccagtttccccaacattcagtgagtcctccagataaatggttatcagagacatccaagaacattaaattggtgttctctatcatattatggcataac |
100 |
Q |
| |
|
|||||||||| |||| |||||| ||||| |||||||||||| || ||| ||||| | ||| | | ||||| | ||||||||||||||||| ||||| |
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| T |
15477966 |
tttccagtttatccaatattcagcgagtcatccagataaatgattttcatagacaacgaagtatttcaaattacttttctctatcatattatgacataag |
15478065 |
T |
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| Q |
101 |
agatgagaaagaggtccagtcaaattgttagaacttattttgaaaacactcacatttgaagttaattgaggaaggccaccactcaaaccatta |
193 |
Q |
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|| |||||||| | || | || ||||||| | |||| | |||| | |||||||||||||||| ||||||||| |||||| ||||||||| |
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| T |
15478066 |
aggtgagaaagggacccggacatattgttaccatttatatcaaaaataaccacatttgaagttaatcgaggaaggctaccacttaaaccatta |
15478158 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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