View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4603_low_11 (Length: 346)
Name: NF4603_low_11
Description: NF4603
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4603_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 17 - 339
Target Start/End: Original strand, 1769217 - 1769539
Alignment:
| Q |
17 |
caaggtaccttagggttggagaaagagatgaaattgaaagtggaatattcccggaaaatttgttgtgagaaagttcgagaataataaggttttttaagga |
116 |
Q |
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| T |
1769217 |
caaggtaccttagggttggatatagagatgaaattgaaagtggaatattcccggaaaatttgttgtgagaaagttggagaataataaggttttttaagga |
1769316 |
T |
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| Q |
117 |
agtgaaaatatcaggtatgttaccactaagttggtttccttggagactaaggtatgtgagatttgttaggtttttaagggatactggaatggttcctgtg |
216 |
Q |
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| T |
1769317 |
agtgaaaatatcaggtatgttaccactaagttggtttccttggagactaaggtatgtgagatttgttaggtttttaagggatactggaatggttcctgtg |
1769416 |
T |
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| Q |
217 |
agaaaattgttacctagttttaactgagttactttagtcaatgcagatattgaactaggaattggtcctgtgaatttgtttccttgtagactaaatgctt |
316 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
1769417 |
agaaaattgttacctagttttaactgagttaatttagtcaatgcagatattgaactaggaattggtcctgtgaatttgttttcttgtagactaaatgctt |
1769516 |
T |
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| Q |
317 |
ctaattggttcatgttgcctatg |
339 |
Q |
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|||||||||||||| |||||||| |
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| T |
1769517 |
ctaattggttcatgctgcctatg |
1769539 |
T |
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