View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4603_low_14 (Length: 316)
Name: NF4603_low_14
Description: NF4603
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4603_low_14 |
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Alignment Details
Target: chr6 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 1 - 297
Target Start/End: Complemental strand, 183234 - 182938
Alignment:
| Q |
1 |
gaataagtgttgtcaaccatacccaactactctatagtcttcaccattaatacacaaccctcataattttcttagagaattaagtactacttgacaaaac |
100 |
Q |
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| T |
183234 |
gaataagtgttgtcaaccatacccaactactctatagtcttcaccattaatacacaaccctcataattttcttagagaattaagtactacttgacaaaac |
183135 |
T |
|
| Q |
101 |
ataaatccaaattagtctctataatacaatgatttatggactaatttatcccgaatatgaaaatgtcatagattaatttgtgttttatttattgttagag |
200 |
Q |
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| T |
183134 |
ataaatccaaattagtctctataatacaatgatttatggactaatttatcccgaatatgaaaatgtcatagattaatttgtgttttatttattgttagag |
183035 |
T |
|
| Q |
201 |
actgaattaaattgtatcttcactcattaatcaaatagatagtttgttaggattgcatacttttatatgaactgattggctataaaatcaattaaat |
297 |
Q |
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| T |
183034 |
actgaattaaattgtatcttcactcattaatcaaatagatagtttgttaggattgcatacttttatatgaactgattggctataaaatcaattaaat |
182938 |
T |
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Target: chr8 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 108 - 151
Target Start/End: Original strand, 15962607 - 15962650
Alignment:
| Q |
108 |
caaattagtctctataatacaatgatttatggactaatttatcc |
151 |
Q |
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| T |
15962607 |
caaattagtctctctaatacaatgagttaaggactaatttatcc |
15962650 |
T |
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