View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4603_low_15 (Length: 269)

Name: NF4603_low_15
Description: NF4603
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4603_low_15
NF4603_low_15
[»] chr1 (2 HSPs)
chr1 (1-251)||(38117136-38117386)
chr1 (65-245)||(38160968-38161148)
[»] chr4 (1 HSPs)
chr4 (1-245)||(49004945-49005188)


Alignment Details
Target: chr1 (Bit Score: 251; Significance: 1e-139; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 251
Target Start/End: Complemental strand, 38117386 - 38117136
Alignment:
Q  1 tacctccaacaattttaaccatatgtcatgactcatgattacatattttcaagtaaagtttaatctaatgataaacagtcaagcacagcccaataaaaat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38117386 tacctccaacaattttaaccatatgtcatgactcatgattacatattttcaagtaaagtttaatctaatgataaacagtcaagcacagcccaataaaaat 38117287  T
Q  101 gaattggatattaatgatccaagaaagcccaagtattcccagagttagcacattcacacctcttctatcaaagtatactttttacctgattattaatgtt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38117286 gaattggatattaatgatccaagaaagcccaagtattcccagagttagcacattcacacctcttctatcaaagtatactttttacctgattattaatgtt 38117187  T
Q  201 taggggggtgagagattatgcatatacctagatatgacatgaggcgattac 251  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38117186 taggggggtgagagattatgcatatacctagatatgacatgaggcgattac 38117136  T

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Target: chr1; HSP #2
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 65 - 245
Target Start/End: Complemental strand, 38161148 - 38160968
Alignment:
Q  65 ctaatgataaacagtcaagcacagcccaataaaaatgaattggatattaatgatccaagaaagcccaagtattcccagagttagcacattcacacctctt 164  Q
    |||||||||||| || || |||||||||| | |||||||||||||||||||||||||| | | || |||||||||||||||| |||||||||||| ||||    
T  38161148 ctaatgataaaccgtaaaacacagcccaacagaaatgaattggatattaatgatccaaaacaacctaagtattcccagagttggcacattcacacatctt 38161049  T
Q  165 ctatcaaagtatactttttacctgattattaatgtttaggggggtgagagattatgcatatacctagatatgacatgaggc 245  Q
    ||||| ||||||||| |||||||||||| |||||||||  |||||||||||||||||||||||||||| |||||| |||||    
T  38161048 ctatcgaagtatactctttacctgattaataatgtttaaaggggtgagagattatgcatatacctagacatgacaagaggc 38160968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 49005188 - 49004945
Alignment:
Q  1 tacctccaacaattttaaccatatgtcatgactcatgattacatattttcaagtaaagtttaatctaatgataaacagtcaagcacagcccaataaaaat 100  Q
    ||||||||||||||||||||| ||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||    
T  49005188 tacctccaacaattttaaccaaatgtcatgaatgatgattacatattttcaagtaaagtttaatctaatgataaacagtcaaacacagcccaatagaaat 49005089  T
Q  101 gaattggatattaatgatccaagaaagcccaagtattcccagagttagcacattcacacctcttctatcaaagtatactttttacctgattattaatgtt 200  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| |  ||||||    
T  49005088 gaattggatattaatgatccaagacagcccaagtattcccagagttagcacattcacacctgttttatcaaagtatactttttacctgatgaaaaatgtt 49004989  T
Q  201 taggggggtgagagattatgcatatacctagatatgacatgaggc 245  Q
    | |||||||||||||||||||||||||||||| |||||| |||||    
T  49004988 t-ggggggtgagagattatgcatatacctagacatgacacgaggc 49004945  T

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