View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4603_low_3 (Length: 500)
Name: NF4603_low_3
Description: NF4603
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4603_low_3 |
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| [»] chr5 (5 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 343; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 14 - 500
Target Start/End: Complemental strand, 11860758 - 11860272
Alignment:
| Q |
14 |
ctcctcctcatgatcccatcttagagtcaagaactcgaggtgttgtttatttttcaaaaattcatctttggcagcttcctttgatggagagaacttgact |
113 |
Q |
| |
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|||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| |||||||||||||||||||||||||||||| |
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| T |
11860758 |
ctcctcgtcatgatcccatcttagagtcaagaactcgaggtgttgcttatttttcaaaaaatcatctttagcagcttcctttgatggagagaacttgact |
11860659 |
T |
|
| Q |
114 |
tgctccagatgcgaaatttccaagcggcctctcagattattaagatctgtgagtgatcttagtcctcccgttacttgtttcttgctggccacaaaaagtg |
213 |
Q |
| |
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|| || ||||| |||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| || ||||||| |
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| T |
11860658 |
tgttcaagatgagaaatttccaagtggcctctcagattgttaagatctgtgagtgatcttagtcctcccgtgacttgtttcttgctggctacgaaaagtg |
11860559 |
T |
|
| Q |
214 |
acaatgtttgcaaggaagtgagcttacttatcccacttggcatgtgagttagatccaagcatccctctaagtgaagatggttgaggcaactcaaatcatc |
313 |
Q |
| |
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||||||||||||| ||||| |||||| |||||||||||||||| |||||||||||||||||||||||||||| |||||| ||||||||||||||||| || |
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| T |
11860558 |
acaatgtttgcaaagaagtaagcttatttatcccacttggcatttgagttagatccaagcatccctctaagtcaagatgattgaggcaactcaaatcgtc |
11860459 |
T |
|
| Q |
314 |
tatgcctttcggcaattccttgaggacatgacattgagacagtttcaatggttgcaagtggataagaattgtgatgcaactaggaagcttctgcatattg |
413 |
Q |
| |
|
||| |||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| ||||||||||||||||||| || ||| |
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| T |
11860458 |
catgtcttttggcaattccttgaggacatgacattgagacagtttcaatgtttgcaagtggataagatttgttatgcaactaggaagcttctctatgttg |
11860359 |
T |
|
| Q |
414 |
ttatgggaaagatctagatacctcaagtatttcacctcctgaatagagattggaaccatcttaatccccaagtcatgtagatccaac |
500 |
Q |
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||||||||||||||||||||||||||||| ||||| |||| ||||||| | |||||| |||| |||||||| ||||||||||||||| |
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| T |
11860358 |
ttatgggaaagatctagatacctcaagtacttcacatcctcaatagagctcggaaccgtcttgatccccaaatcatgtagatccaac |
11860272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 14 - 500
Target Start/End: Complemental strand, 11828623 - 11828137
Alignment:
| Q |
14 |
ctcctcctcatgatcccatcttagagtcaagaactcgaggtgttgtttatttttcaaaaattcatctttggcagcttcctttgatggagagaacttgact |
113 |
Q |
| |
|
|||||| || |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| |||||||| ||||||||||||||||||| | |
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| T |
11828623 |
ctcctcatcgtgatcccatcttagagtcaagaactcaaggtgttgtttatttttcaaaaaatcatctttagcagcttcttttgatggagagaacttgatt |
11828524 |
T |
|
| Q |
114 |
tgctccagatgcgaaatttccaagcggcctctcagattattaagatctgtgagtgatcttagtcctcccgttacttgtttcttgctggccacaaaaagtg |
213 |
Q |
| |
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|| ||||||||| |||||||||| |||| |||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| || ||||||| |
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| T |
11828523 |
tgttccagatgcataatttccaagtggcccctcagattgttaagatctgtgagtgatcttagtcctcccgtgacttgtttcttgctggctacgaaaagtg |
11828424 |
T |
|
| Q |
214 |
acaatgtttgcaaggaagtgagcttacttatcccacttggcatgtgagttagatccaagcatccctctaagtgaagatggttgaggcaactcaaatcatc |
313 |
Q |
| |
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||||||||||||| ||||||||||||||||| ||||||||||| |||||||||||||||||||| ||||||| ||||||||| ||||||||||||||||| |
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| T |
11828423 |
acaatgtttgcaaagaagtgagcttacttattccacttggcatttgagttagatccaagcatccatctaagtcaagatggttaaggcaactcaaatcatc |
11828324 |
T |
|
| Q |
314 |
tatgcctttcggcaattccttgaggacatgacattgagacagtttcaatggttgcaagtggataagaattgtgatgcaactaggaagcttctgcatattg |
413 |
Q |
| |
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||| |||| |||||||| ||||||||||||||| ||||||||||||| | |||||||||||||||| |||| ||||||||||||||||||| ||| ||| |
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| T |
11828323 |
catgtcttttggcaattctttgaggacatgacatcgagacagtttcaacgtttgcaagtggataagatttgttatgcaactaggaagcttctccatgttg |
11828224 |
T |
|
| Q |
414 |
ttatgggaaagatctagatacctcaagtatttcacctcctgaatagagattggaaccatcttaatccccaagtcatgtagatccaac |
500 |
Q |
| |
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||||| ||||||||||||||||||||||| ||||| |||| ||||||| ||||||| |||| |||||||||||||||||||||||| |
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| T |
11828223 |
ttatgtgaaagatctagatacctcaagtacttcacatcctcaatagagcttggaactgtcttgatccccaagtcatgtagatccaac |
11828137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 14 - 490
Target Start/End: Complemental strand, 12039523 - 12039047
Alignment:
| Q |
14 |
ctcctcctcatgatcccatcttagagtcaagaactcgaggtgttgtttatttttcaaaaattcatctttggcagcttcctttgatggagagaacttgact |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| | |||| || ||| |||||||||||||||||||| ||| |||||| ||| | |||||||||||| |
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|
| T |
12039523 |
ctcctcctcatgatcccatcttagagtcaagaacccaaggtattttttgtttttcaaaaattcatctttagcaatttccttggattgcgagaacttgact |
12039424 |
T |
|
| Q |
114 |
tgctccagatgcgaaatttccaagcggcctctcagattattaagatctgtgagtgatcttagtcctcccgttacttgtttcttgctggccacaaaaagtg |
213 |
Q |
| |
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|| ||||||||||||||||||| | | |||||||| || || ||||| |||||| |||||||||||| || || | ||||||||| || ||||| |||| |
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| T |
12039423 |
tgttccagatgcgaaatttccatgtgacctctcagtttgttgagatcggtgagttctcttagtcctcctgtaacgtatttcttgctagctacaaagagtg |
12039324 |
T |
|
| Q |
214 |
acaatgtttgcaaggaagtgagcttacttatcccacttggcatgtgagttagatccaagcatccctctaagtgaagatggttgaggcaactcaaatcatc |
313 |
Q |
| |
|
|||||||||| || |||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
12039323 |
acaatgtttgtaaagaagtgagcttatttatcccacttggcatttgagttagatccaagcatccctctaagtcaagatggttgaggcaactcaaatcatc |
12039224 |
T |
|
| Q |
314 |
tatgcctttcggcaattccttgaggacatgacattgagacagtttcaatggttgcaagtggataagaattgtgatgcaactaggaagcttctgcatattg |
413 |
Q |
| |
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||| |||| |||||||||||||| | |||||||||||| |||||||| | |||||||||||||||| |||||||||||||||||||||||| || ||| |
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| T |
12039223 |
catgtcttttggcaattccttgagaaaatgacattgagaaagtttcaacgtttgcaagtggataagagttgtgatgcaactaggaagcttctctatgttg |
12039124 |
T |
|
| Q |
414 |
ttatgggaaagatctagatacctcaagtatttcacctcctgaatagagattggaaccatcttaatccccaagtcatg |
490 |
Q |
| |
|
||||| ||||||||||||||||||||||| |||||||| | ||||||| | |||| | |||| |||||||||||||| |
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|
| T |
12039123 |
ttatgagaaagatctagatacctcaagtacttcacctcttcaatagagctcggaatcgtcttgatccccaagtcatg |
12039047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 21 - 498
Target Start/End: Original strand, 11901803 - 11902283
Alignment:
| Q |
21 |
tcatgatcccatcttagagtcaagaactcgaggtgttgtttatttttcaaaaattcatctttggcagcttcctttgatggagagaacttgacttgctcca |
120 |
Q |
| |
|
||||||||||||||||||||||| ||||| ||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||| ||||||| || | |
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|
| T |
11901803 |
tcatgatcccatcttagagtcaaaaactcaaggtgttgtttatttttcagaaattcatcttgagcagcttccttagatggagagaacatgacttgttcta |
11901902 |
T |
|
| Q |
121 |
gatgcgaaatttccaagcggcctctcagattattaagatctgtgagtgatcttagtcctcccg---ttacttgtttcttgctggccacaaaaagtgacaa |
217 |
Q |
| |
|
||||||| |||||||| |||||||||||||| |||||||| |||||| |||||||||||| | ||||||||||||||||||||||||| |||||||| |
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| T |
11901903 |
gatgcgatatttccaaccggcctctcagattgttaagatccgtgagttctcttagtcctccagtgattacttgtttcttgctggccacaaagagtgacaa |
11902002 |
T |
|
| Q |
218 |
tgtttgcaaggaagtgagcttacttatcccacttggcatgtgagttagatccaagcatccctctaagtgaagatggttgaggcaactcaaatcatctatg |
317 |
Q |
| |
|
|||||| || |||||||||||| |||| ||||||||||||||||||||||||| ||||||||| | || |||||||||||||||||||| |||| | | |
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|
| T |
11902003 |
tgtttgtaaagaagtgagcttatttataccacttggcatgtgagttagatccaggcatccctcaatgtcaagatggttgaggcaactcaggccatccaag |
11902102 |
T |
|
| Q |
318 |
cctttcggcaattccttgaggacatgacattgagacagtttcaatggttgcaagtggataagaattgtgatgcaactaggaagcttctgcatattgttat |
417 |
Q |
| |
|
|||| |||||||||||||||| |||||||| || | |||||||| ||||||||||||||| | |||||| ||||||| ||||| | || ||||||| |
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|
| T |
11902103 |
tcttttggcaattccttgaggatgtgacattgtgataatttcaatgtttgcaagtggataagcttagtgatggaactaggtagcttttctatgttgttat |
11902202 |
T |
|
| Q |
418 |
gggaaagatctagatacctcaagtatttcacctcctgaatagagattggaaccatcttaatccccaagtcatgtagatcca |
498 |
Q |
| |
|
| ||||||||||||||||||||||| |||||||||| |||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
11902203 |
gagaaagatctagatacctcaagtacttcacctcctcaatagatgttggaaccatcttaatccccaagtcatgtagatcca |
11902283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 27 - 500
Target Start/End: Complemental strand, 11732393 - 11731917
Alignment:
| Q |
27 |
tcccatcttagagtcaagaactcgaggtgttgtttatttttcaaaaattcatctttggcagcttcctttgatggagagaacttgacttgctccagatgcg |
126 |
Q |
| |
|
||||||||||||||||| || | ||||||||||||||||| |||||||||||| || ||||| || |||||||||||||||||||||||||||||| |
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|
| T |
11732393 |
tcccatcttagagtcaaatgctgaatgtgttgtttatttttcacaaattcatctttagccgcttcgttggatggagagaacttgacttgctccagatgca |
11732294 |
T |
|
| Q |
127 |
aaatttccaagcggcctctcagattattaagatctgtgagtgatcttagtcctcccgttact---tgtttcttgctggccacaaaaagtgacaatgtttg |
223 |
Q |
| |
|
||||||||| | | | || || || |||| ||||||| ||||||||||| || | ||||||||||||||||| ||||||||||||||||| |
|
|
| T |
11732293 |
aaatttccagtttgtccttgaggttgttgagatttgtgagttcccttagtcctccggtgtcagcatgtttcttgctggccacgaaaagtgacaatgtttg |
11732194 |
T |
|
| Q |
224 |
caaggaagtgagcttacttatcccacttggcatgtgagttagatccaagcatccctctaagtgaagatggttgaggcaactcaaatcatctatgcctttc |
323 |
Q |
| |
|
||||||||||| ||| |||||| ||||||||||||||||||||||||| ||||| | || ||||||| |||||| | ||| ||| | | | |||| |
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|
| T |
11732193 |
taaggaagtgagtttatctatcccggttggcatgtgagttagatccaagcaaccctcaatgttaagatggctgaggcgagtcagatccttcaagtctttt |
11732094 |
T |
|
| Q |
324 |
ggcaattccttgaggacatgacattgagacagtttcaatggttgcaagtggataagaattgtgatgcaactaggaagcttctgcatattgttatgggaaa |
423 |
Q |
| |
|
||||||||||||||||||||||| | || |||||||| | |||||| |||||||| |||||||||||||||||||||||| || ||||| ||||| | |
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|
| T |
11732093 |
ggcaattccttgaggacatgacagtaggagagtttcaaggtttgcaaatggataagctttgtgatgcaactaggaagcttctctatgttgttgtgggata |
11731994 |
T |
|
| Q |
424 |
gatctagatacctcaagtatttcacctcctgaatagagattggaaccatcttaatccccaagtcatgtagatccaac |
500 |
Q |
| |
|
|||||||| ||||||||||||||| ||||| ||||||| |||| || ||||| |||||||||||||||||||||||| |
|
|
| T |
11731993 |
gatctagaaacctcaagtatttcatctcctcaatagaggttggtacaatcttgatccccaagtcatgtagatccaac |
11731917 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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