View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4603_low_6 (Length: 418)
Name: NF4603_low_6
Description: NF4603
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4603_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 394; Significance: 0; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 1 - 402
Target Start/End: Original strand, 15313606 - 15314007
Alignment:
| Q |
1 |
taagatttgcacacttcaaatcaagtagttgaagtttaaaaggaggaatccattgaggatcaaaattgaagatggataagggtgaaccaaaccacaactc |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15313606 |
taagatttgcacacttcaaatcaagtagttgaagtttaaaaggaggaatccattgaggatcaaaattgaagatggataagggtgaaccaaaccacaactc |
15313705 |
T |
|
| Q |
101 |
ttttaaattgaaaagtttgtcaaaatttcgatgcgtcacaactcctgaaaggttattttctcctacatacaacacctctaaatttgagagttttcctaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15313706 |
ttttaaattgaaaagtttgtcaaaatttcgatgcgtcacaactcctgaaaggttattttctcctacatacaacacctctaaatttgagagttttcctaaa |
15313805 |
T |
|
| Q |
201 |
ctttcaggaggactaccggttaagttatttaagacaacatcaaagacagtcaatgatgacacattccccagagttgttggaatcgatccaatcaataaat |
300 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15313806 |
ctttcaggaagactaccggttaagttatttaagacaacatcaaagacagtcaatgatgacacattccccagagttgttggaatcgatccaatcaataaat |
15313905 |
T |
|
| Q |
301 |
tcatactgagctctagatattcaaggtttgtaaattgccctatccagtcaggaatttttccactcatcttgttgcccatcaaaatcaatgtaatcaagtt |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
15313906 |
tcatactgagctctagatattcaaggtttgtaaattgccctatccagtcaggaatttttccactcatctcgttgcccatcaaaatcaatgtaatcaagtt |
15314005 |
T |
|
| Q |
401 |
tt |
402 |
Q |
| |
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|| |
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|
| T |
15314006 |
tt |
15314007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 1 - 402
Target Start/End: Original strand, 15493975 - 15494376
Alignment:
| Q |
1 |
taagatttgcacacttcaaatcaagtagttgaagtttaaaaggaggaatccattgaggatcaaaattgaagatggataagggtgaaccaaaccacaactc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
15493975 |
taagatttgcacacttcaaatcaagtagttgaagtttaaaaggaggaatccattgaggatcaaaattgaagatggataagggtgaaccaaaccacaactc |
15494074 |
T |
|
| Q |
101 |
ttttaaattgaaaagtttgtcaaaatttcgatgcgtcacaactcctgaaaggttattttctcctacatacaacacctctaaatttgagagttttcctaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15494075 |
ttttaaattgaaaagtttgtcaaaatttcgatgcgtcacaactcctgaaaggttattttctcctacatacaacacctctaaatttgagagttttcctaaa |
15494174 |
T |
|
| Q |
201 |
ctttcaggaggactaccggttaagttatttaagacaacatcaaagacagtcaatgatgacacattccccagagttgttggaatcgatccaatcaataaat |
300 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15494175 |
ctttcaggaagactaccggttaagttatttaagacaacatcaaagacagtcaatgatgacacattccccagagttgttggaatcgatccaatcaataaat |
15494274 |
T |
|
| Q |
301 |
tcatactgagctctagatattcaaggtttgtaaattgccctatccagtcaggaatttttccactcatcttgttgcccatcaaaatcaatgtaatcaagtt |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
15494275 |
tcatactgagctctagatattcaaggtttgtaaattgccctatccagtcaggaatttttccactcatctcgttgcccatcaaaatcaatgtaatcaagtt |
15494374 |
T |
|
| Q |
401 |
tt |
402 |
Q |
| |
|
|| |
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|
| T |
15494375 |
tt |
15494376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 130 - 390
Target Start/End: Original strand, 15446618 - 15446878
Alignment:
| Q |
130 |
gatgcgtcacaactcctgaaaggttattttctcctacatacaacacctctaaatttgagagttttcctaaactttcaggaggactaccggttaagttatt |
229 |
Q |
| |
|
|||| ||||||||||| || || ||||||||| ||| ||| |||| ||||| ||||| || || ||||||| |||| | ||||||| |||||||| |
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| T |
15446618 |
gatgggtcacaactccagagagtgaattttctccaacacccaataccttcaaattcgagaggttccccaaactttgaggaaggttaccggtcaagttatt |
15446717 |
T |
|
| Q |
230 |
taagacaacatcaaagacagtcaatgatgacacattccccagagttgttggaatcgatccaatcaataaattcatactgagctctagatattcaaggttt |
329 |
Q |
| |
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| | ||||||| ||| |||| || ||||| | |||||||| |||| | ||||| |||||||| ||||||||| || ||| | ||||| || || || |
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|
| T |
15446718 |
tgaagcaacatcgaaggcagttaaagatgataaattccccaaagttatcggaatagatccaattaataaattcctatagagatttagattttgtagatta |
15446817 |
T |
|
| Q |
330 |
gtaaattgccctatccagtcaggaatttttccactcatcttgttgcccatcaaaatcaatg |
390 |
Q |
| |
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| ||||||||||||||||||||||||| |||||||||||||||| || |||| ||||||| |
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| T |
15446818 |
gcaaattgccctatccagtcaggaattattccactcatcttgtttcctctcaatatcaatg |
15446878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 15297983 - 15298048
Alignment:
| Q |
1 |
taagatttgcacacttcaaatcaagtagttgaagtttaaaaggaggaatccattgaggatcaaaat |
66 |
Q |
| |
|
|||||| |||| || |||||||||||| |||||||||||||||||||||||| || |||||||||| |
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|
| T |
15297983 |
taagatatgcatacatcaaatcaagtatttgaagtttaaaaggaggaatccagtggggatcaaaat |
15298048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 15478352 - 15478417
Alignment:
| Q |
1 |
taagatttgcacacttcaaatcaagtagttgaagtttaaaaggaggaatccattgaggatcaaaat |
66 |
Q |
| |
|
|||||| |||| || |||||||||||| |||||||||||||||||||||||| || |||||||||| |
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| T |
15478352 |
taagatatgcatacatcaaatcaagtatttgaagtttaaaaggaggaatccagtggggatcaaaat |
15478417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 15284226 - 15284291
Alignment:
| Q |
1 |
taagatttgcacacttcaaatcaagtagttgaagtttaaaaggaggaatccattgaggatcaaaat |
66 |
Q |
| |
|
||||||||||| ||| |||||||| |||||||||||||||||||||||| || |||||||||| |
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|
| T |
15284226 |
taagatttgcatactgtaaatcaagattttgaagtttaaaaggaggaatccaatggggatcaaaat |
15284291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 15464595 - 15464660
Alignment:
| Q |
1 |
taagatttgcacacttcaaatcaagtagttgaagtttaaaaggaggaatccattgaggatcaaaat |
66 |
Q |
| |
|
||||||||||| ||| |||||||| |||||||||||||||||||||||| || |||||||||| |
|
|
| T |
15464595 |
taagatttgcatactgtaaatcaagattttgaagtttaaaaggaggaatccaatggggatcaaaat |
15464660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 29 - 73
Target Start/End: Original strand, 15302769 - 15302813
Alignment:
| Q |
29 |
ttgaagtttaaaaggaggaatccattgaggatcaaaattgaagat |
73 |
Q |
| |
|
||||||||||||||| |||||||| || |||||||||| |||||| |
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|
| T |
15302769 |
ttgaagtttaaaagggggaatccaatggggatcaaaatcgaagat |
15302813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 29 - 73
Target Start/End: Original strand, 15483138 - 15483182
Alignment:
| Q |
29 |
ttgaagtttaaaaggaggaatccattgaggatcaaaattgaagat |
73 |
Q |
| |
|
||||||||||||||| |||||||| || |||||||||| |||||| |
|
|
| T |
15483138 |
ttgaagtttaaaagggggaatccaatggggatcaaaatcgaagat |
15483182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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