View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4603_low_7 (Length: 388)

Name: NF4603_low_7
Description: NF4603
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4603_low_7
NF4603_low_7
[»] chr1 (1 HSPs)
chr1 (1-388)||(38293179-38293583)


Alignment Details
Target: chr1 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 1 - 388
Target Start/End: Original strand, 38293179 - 38293583
Alignment:
Q  1 ggcaattatatttgctgttagctctcgaaattcttcagtcatctctattttctttgatttctcctttgtttcaatagcttgctttttccactcttctagc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38293179 ggcaattatatttgctgttagctctcgaaattcttcagtcatctctattttctttgatttctcctttgtttcaatagcttgctttttccactcttctagc 38293278  T
Q  101 atggaaatggtacatgctgccattctacttatcataacctgtcaaatatatgatatagcatttagaatgcacgcatatacaatgccaaatgccaatgaaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38293279 atggaaatggtacatgctgccattctacttatcataacctgtcaaatatatgatatagcatttagaatgcacgcatatacaatgccaaatgccaatgaaa 38293378  T
Q  201 gaagaattaatttctaatctttttacttatttttaccaatgactat-----------------gtatcaactcgagataacaaagatctatttaaggggt 283  Q
    |||||||||||||||| |||||||||||||||||||||||||||||                 ||||| |||||||||||||||||||||||||||||||    
T  38293379 gaagaattaatttctattctttttacttatttttaccaatgactattttcttgataaatcaaggtatcgactcgagataacaaagatctatttaaggggt 38293478  T
Q  284 tgatatatcaattatgtaacaccaattgaatctataataaagaatatgatatcttttgaaaatcttgtctaataaattaaaagtcgagttttgtaaaata 383  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||  |||||||||||||||    
T  38293479 tgatatatcaattatgtaacaccaattgaatttataataaagaatatgatatcttttgaaaatcttgtctgataaattaaaaggtgagttttgtaaaata 38293578  T
Q  384 aattt 388  Q
    |||||    
T  38293579 aattt 38293583  T

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