View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4603_low_9 (Length: 381)
Name: NF4603_low_9
Description: NF4603
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4603_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 112 - 371
Target Start/End: Complemental strand, 35576843 - 35576586
Alignment:
| Q |
112 |
ctataaatagatccaacggctctccattaactttacacatgtgtagacgccctacaccccatagactacaaatcgaaattccattcttcaccaccacgtt |
211 |
Q |
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| T |
35576843 |
ctataaatagatccaacggctctccattaactttacacatgtgtagccgccctacacc--atagactacaaatcgaaattccattcttcaccaccacgtt |
35576746 |
T |
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| Q |
212 |
tgaacacacgcgccaccaaacgcgcggggagaacattacaaccccattctccctctctttctttttcatatctctctccacacctcgtcgaactaccacc |
311 |
Q |
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| T |
35576745 |
taaacacacgcgccaccaaacgcgcggggagaacattacaaccccattctccctctctttctttttcatatctctctccacacctcgtcgaactaccacc |
35576646 |
T |
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| Q |
312 |
accaccataacataaccacatctctctcaatttcataatcacttcttcaccgcgatttct |
371 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35576645 |
accaccataacataaccacatctctctcaatttcataatcacttcttcaccgcgatttct |
35576586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 91 - 120
Target Start/End: Original strand, 31428007 - 31428036
Alignment:
| Q |
91 |
ggttgtacaaatatcatttctctataaata |
120 |
Q |
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| T |
31428007 |
ggttgtacaaatatcatttctctataaata |
31428036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 92 - 120
Target Start/End: Original strand, 35967443 - 35967471
Alignment:
| Q |
92 |
gttgtacaaatatcatttctctataaata |
120 |
Q |
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| T |
35967443 |
gttgtacaaatatcatttctctataaata |
35967471 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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