View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4604-Insertion-1 (Length: 1071)
Name: NF4604-Insertion-1
Description: NF4604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4604-Insertion-1 |
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Alignment Details
Target: chr4 (Bit Score: 795; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 795; E-Value: 0
Query Start/End: Original strand, 122 - 1047
Target Start/End: Original strand, 443394 - 444315
Alignment:
| Q |
122 |
ggactaatgttatgggtccttacatatttagggaccaaacttatggttaagtcaatacaatttgccaagagagtgcttgtgactctgtgggagctttacc |
221 |
Q |
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| T |
443394 |
ggactaatgttatgggtccttacatatttagggaccaaacttatggttaagtcaatacaatttgccaagagagtgcttgtgactctgtgggagctttacc |
443493 |
T |
|
| Q |
222 |
ag--gaaagtgtggtttgatgaaaaaacagcaaatgcaatttgcaccgctatggggtatcattcgttttctttgtttggttacatgcatgttttaaaatc |
319 |
Q |
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| T |
443494 |
agaggaaagtgtggtttgatgaaaaaacagcaaatgcaatttgcaccgctatggggtatcattcgttttctttgtttggttacatgcatgttttaaaatc |
443593 |
T |
|
| Q |
320 |
ttaccttaggtagtttaagcctaattatgattatgtatttttatttcttaggatcaagacagaagctttatcttttctacttgagaacaagaagcagatt |
419 |
Q |
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| T |
443594 |
ttaccttaggtagtttaagcctaattatgattatgtatttttatttcttaggatcaagacagaagctttatcttttctacttgagaacaagaagcagatt |
443693 |
T |
|
| Q |
420 |
atagaaattgatgattcagacagtgatgatgaaccaacagagtcacctcaggctatcatccttgataaggtgagattgaataataaagctttgcatgaaa |
519 |
Q |
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| T |
443694 |
atagaaattgatgattcagacagtgatgatgaaccaacagagtcacctcaggctatcatccttgataaggtgagattgaataataaagctttgcatgaaa |
443793 |
T |
|
| Q |
520 |
gtcnnnnnnnnnnnnnnnnatttagacagtgatagcttcattcttggcatgcagtcggagaaactaagctcaaccaatttcatgtcatgcg-cggcaaac |
618 |
Q |
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| T |
443794 |
gtcttttttttt-------atttagacagtgatagcttcattcttggcatgcagtcggagaaactaagctcaaccaatttcatgtcatgcgacggcaaac |
443886 |
T |
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| Q |
619 |
taccggtggcggaggctttgggtgggaggtcggagaagctaaaccttcaaacactccaatccaaagttgaacgcgacccaaaaggctacatattggaggt |
718 |
Q |
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| T |
443887 |
taatggtggcggaggctttgggtgggaggtcggagaagctaaaccttcaaacactccaatccaaagttgaacgcgacccaataggctacatattggaggt |
443986 |
T |
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| Q |
719 |
tcttcttattcactctcaattcaattcctccctccaactatttcaacaagcggccatgaacttcatttccatcaacggaatcatcgattctgacctaaca |
818 |
Q |
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| T |
443987 |
tctccttattcactctcaattcaattcctccctccaactatttcaacaagcggccatgaacttcatttccgtcaacggaatcatcgattctgacctaaca |
444086 |
T |
|
| Q |
819 |
actgttgcttctgatccaactgtcgctgaagacctggctgagagggccatgttcctcacacttgttgcccctttctaccctacacttttcttcctcgccg |
918 |
Q |
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| T |
444087 |
actgttgcttctgatccaactgtcgctgaagacctggctgagagggccatgttcctcacacttgttgccccttcctaccctacacttttcttcctcgccg |
444186 |
T |
|
| Q |
919 |
atttccctat-agacttgtttatttgctccatagtttcgcacagtttaatccttccatgtctcgcttcaaactcgcaccacgctcttattctactcg-ta |
1016 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| ||||||||||||||||||| || |
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| T |
444187 |
atttccctataagacttgtttatttgctccatagtttcgcacagtttattccttccatgtctcgtttcaaactcgca-cacgctcttattctactcgtta |
444285 |
T |
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| Q |
1017 |
atagacagggttttgtttctgaacaatatac |
1047 |
Q |
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||||||| ||||||||||||||||||||||| |
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| T |
444286 |
atagaca-ggttttgtttctgaacaatatac |
444315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 82; E-Value: 4e-38
Query Start/End: Original strand, 8 - 93
Target Start/End: Original strand, 443315 - 443400
Alignment:
| Q |
8 |
ctaaatttattattcattagtgattagtcaattggtctctagattcagacactaatatgattgatgcttgcagattcagggactaa |
93 |
Q |
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| T |
443315 |
ctaaatttatcattcattagtgattagtcaattggtctctagattcagacactaatatgattgatgcttgcagattcagggactaa |
443400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 183 - 268
Target Start/End: Complemental strand, 465466 - 465379
Alignment:
| Q |
183 |
ttgccaagagagtgcttgtgactctgtgggagctttaccag--gaaagtgtggtttgatgaaaaaacagcaaatgcaatttgcaccgc |
268 |
Q |
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| T |
465466 |
ttgccatgagagtgcttgtgattctgtggaagctttacaagagggaagtgtggtttgatgaaaaaacagcaaatgcaatttgcaccgc |
465379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 183 - 265
Target Start/End: Original strand, 444670 - 444754
Alignment:
| Q |
183 |
ttgccaagagagtgcttgtgactctgtgggagctttaccag--gaaagtgtggtttgatgaaaaaacagcaaatgcaatttgcac |
265 |
Q |
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||||||| ||||||||||||| ||||||| |||||||||| ||||||||||||||||||||||||||||||||| |||||||| |
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| T |
444670 |
ttgccaaaagagtgcttgtgattctgtggcggctttaccagaggaaagtgtggtttgatgaaaaaacagcaaatgctatttgcac |
444754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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