View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4604-Insertion-12 (Length: 159)
Name: NF4604-Insertion-12
Description: NF4604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4604-Insertion-12 |
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| [»] chr6 (1 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 140; Significance: 1e-73; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 140; E-Value: 1e-73
Query Start/End: Original strand, 8 - 159
Target Start/End: Complemental strand, 7714350 - 7714199
Alignment:
| Q |
8 |
aagatcaccattgaagagaactaatttacaaaggtagtcctcttctgacacagaaagattttcagctttgatttgatctttaatgatcaaaagaggattg |
107 |
Q |
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| T |
7714350 |
aagatcaccattgaagagaactaatttgcaaaggtagtcctcttctgacacagaaagattttcagctttgatttgatctttaatgatcaaaagaggatta |
7714251 |
T |
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| Q |
108 |
aggaaccattcaaaaaacttctcctttggtctgtttgttgtagttagttcag |
159 |
Q |
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| T |
7714250 |
aggaaccattcaaaaaacttctcctttggtctgtttgtagtagttagttcag |
7714199 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 79; Significance: 3e-37; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 79; E-Value: 3e-37
Query Start/End: Original strand, 21 - 159
Target Start/End: Original strand, 11208721 - 11208859
Alignment:
| Q |
21 |
aagagaactaatttacaaaggtagtcctcttctgacacagaaagattttcagctttgatttgatctttaatgatcaaaagaggattgaggaaccattcaa |
120 |
Q |
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| T |
11208721 |
aagagaactaatttgcagaggtagtcttcttctgaggcagatagattttcagctttaatttgttctttaatgatcaaaagaggattgaggaaccattcaa |
11208820 |
T |
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| Q |
121 |
aaaacttctcctttggtctgtttgttgtagttagttcag |
159 |
Q |
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| T |
11208821 |
aaaatttctctcttggtctgttcgagggagttagttcag |
11208859 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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