View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4604-Insertion-2 (Length: 1034)

Name: NF4604-Insertion-2
Description: NF4604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4604-Insertion-2
NF4604-Insertion-2
[»] chr7 (7 HSPs)
chr7 (663-1021)||(1333038-1333397)
chr7 (8-280)||(1333716-1333988)
chr7 (401-661)||(1333430-1333689)
chr7 (517-593)||(12635665-12635741)
chr7 (846-902)||(12635949-12636006)
chr7 (544-595)||(28449790-28449841)
chr7 (469-502)||(12635596-12635629)
[»] chr6 (1 HSPs)
chr6 (763-823)||(17263868-17263928)
[»] chr2 (3 HSPs)
chr2 (544-588)||(410259-410303)
chr2 (544-586)||(821153-821195)
chr2 (546-588)||(965482-965524)
[»] chr1 (1 HSPs)
chr1 (845-908)||(41662526-41662590)


Alignment Details
Target: chr7 (Bit Score: 294; Significance: 1e-164; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 294; E-Value: 1e-164
Query Start/End: Original strand, 663 - 1021
Target Start/End: Complemental strand, 1333397 - 1333038
Alignment:
Q  663 tgtctaaacacacatcttttatgttttttgtttgcatcattaacaggtcaacgcactcgaggacgtaagggctagagaatgtgacttagaaaatttggtg 762  Q
    ||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||    
T  1333397 tgtctaaacacacatcttt-atgttttttgtgtgcatcattaacaggtcaacgcactcgaggacgtaagggctggagaatgtgacttagaaaattgggtg 1333299  T
Q  763 gaccgagattttgttccgcagtgcctttcattacaccttacaacttgcaatattttcaactactacggtgggtcaagagggtgagcttctgctagcaagg 862  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||    
T  1333298 gaccgagattttgttccgcagtgcctttcattacaccttacaacttgcaatattttcaactactacggt-ggtcaagaaggtgagcttctgctagcaagg 1333200  T
Q  863 tatatcttgaagaatgcgagag-tttacaaaccatgacaatatggaatatatgtttcaaaataaaagg-aaactatgctcatgcccaagagcctctgcaa 960  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  1333199 tatatcttgaagaatgcgagagttttacaaaccatgacaatatggaatatatgtttcaaaataaaaggaaaactatgctcatgcccaagagcctctgcaa 1333100  T
Q  961 catgtaaacttgccatttatgatgctcc-atgtacccccgtcgtcccttaattaaagtggct 1021  Q
    |||||||||||||||||||||||||||| |||||| ||||||||||||||||  ||||||||    
T  1333099 catgtaaacttgccatttatgatgctccaatgtactcccgtcgtcccttaatataagtggct 1333038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 8 - 280
Target Start/End: Complemental strand, 1333988 - 1333716
Alignment:
Q  8 tataccacgttgattttgatcaccgttggtttgtttttaaactttttagtggttgtccagtacttgaggattttgaagctgaaattttatatatttacgc 107  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1333988 tataccacgttgattttgatcatcgttggtttgtttttaaactttttagtggttgtccagtacttgaggattttgaagctgaaattttatatatttacgc 1333889  T
Q  108 tagcataaacatgtcaacttcccctgatcgagtgcttgaatgtttacccaagttggttagggcaaaactttcagacatatctgaagattttcctttggaa 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1333888 tagcataaacatgtcaacttcccctgatcgagtgcttgaatgtttacccaagttggttagggcaaaactttcagacatatctgaagattttcctttggaa 1333789  T
Q  208 cccttttgtagtgttgaatcgctttacttgaaagaggtaacttatgtgcttaattaatttgttatttatttct 280  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  1333788 cccttttgtagtgttgaatcgctttacttgaaagaggtaaattatgtgcttaattaatttgttatttatttct 1333716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 401 - 661
Target Start/End: Complemental strand, 1333689 - 1333430
Alignment:
Q  401 aaattttatcctgacttccaacaattaatctttcttcatattctaggtggagtactgtgaagatttgtttcctacttttaataatttgacccaactggtg 500  Q
    ||||||||  |||||||| |||||| ||||||||||||| |||||||||||||||| ||| | |||||||||||||||||||||||||||||||||||||    
T  1333689 aaattttactctgacttctaacaatgaatctttcttcatgttctaggtggagtactatgatggtttgtttcctacttttaataatttgacccaactggtg 1333590  T
Q  501 cttatttctttggatagttggcaatccttagtcgacattctcaaccattgccctaagcttcaaaagcttgaacttgatccggtttgttaagtttatatat 600  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| |||||||||| ||| |||||    
T  1333589 cttatttctttggatagttggcaatccttagtcgacgttctcaaccattgccctaagcttcaaaggcttgaacttgatcaggtttgttaa-tttttatat 1333491  T
Q  601 gatttatctttttataacacactattagaaattgggttgatcctaactcaaccctacaaag 661  Q
    |||||||||||||||| ||||||| ||||||||||||||| ||||||||||||||||||||    
T  1333490 gatttatctttttatagcacactactagaaattgggttgaccctaactcaaccctacaaag 1333430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 517 - 593
Target Start/End: Original strand, 12635665 - 12635741
Alignment:
Q  517 gttggcaatccttagtcgacattctcaaccattgccctaagcttcaaaagcttgaacttgatccggtttgttaagtt 593  Q
    ||||||||| |||||| ||  |||||||||| |||||||||||||||||| ||||  |||||| |||||||||||||    
T  12635665 gttggcaattcttagtagaacttctcaaccactgccctaagcttcaaaagtttgacgttgatcaggtttgttaagtt 12635741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 846 - 902
Target Start/End: Original strand, 12635949 - 12636006
Alignment:
Q  846 agcttctgctagcaaggtatatcttgaagaatgcgagag-tttacaaaccatgacaat 902  Q
    ||||| |||||||||||||||| ||||||||||| |||| ||||||||||||||||||    
T  12635949 agcttatgctagcaaggtatattttgaagaatgcaagagttttacaaaccatgacaat 12636006  T

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Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 544 - 595
Target Start/End: Complemental strand, 28449841 - 28449790
Alignment:
Q  544 accattgccctaagcttcaaaagcttgaacttgatccggtttgttaagttta 595  Q
    ||||||| ||||| |||||||||||||| ||| ||| |||||||||||||||    
T  28449841 accattgtcctaaccttcaaaagcttgagctttatcaggtttgttaagttta 28449790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 469 - 502
Target Start/End: Original strand, 12635596 - 12635629
Alignment:
Q  469 ttcctacttttaataatttgacccaactggtgct 502  Q
    ||||||||||| ||||||||||||||||||||||    
T  12635596 ttcctacttttcataatttgacccaactggtgct 12635629  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 763 - 823
Target Start/End: Complemental strand, 17263928 - 17263868
Alignment:
Q  763 gaccgagattttgttccgcagtgcctttcattacaccttacaacttgcaatattttcaact 823  Q
    |||| |||| ||||||| || ||||||||||||||||||| || ||||||| |||||||||    
T  17263928 gacccagatgttgttccacaatgcctttcattacaccttagaaattgcaatcttttcaact 17263868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000006; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 544 - 588
Target Start/End: Original strand, 410259 - 410303
Alignment:
Q  544 accattgccctaagcttcaaaagcttgaacttgatccggtttgtt 588  Q
    |||||||||||||||||||||| ||||||||| ||| ||||||||    
T  410259 accattgccctaagcttcaaaatcttgaactttatcgggtttgtt 410303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 544 - 586
Target Start/End: Original strand, 821153 - 821195
Alignment:
Q  544 accattgccctaagcttcaaaagcttgaacttgatccggtttg 586  Q
    |||||||||||||||||||||| ||||||||| ||| ||||||    
T  821153 accattgccctaagcttcaaaatcttgaactttatcaggtttg 821195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 546 - 588
Target Start/End: Complemental strand, 965524 - 965482
Alignment:
Q  546 cattgccctaagcttcaaaagcttgaacttgatccggtttgtt 588  Q
    |||||||||||||||||||| ||||||||| ||| ||||||||    
T  965524 cattgccctaagcttcaaaatcttgaactttatcaggtttgtt 965482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 845 - 908
Target Start/End: Complemental strand, 41662590 - 41662526
Alignment:
Q  845 gagcttctgctagcaaggtatatcttgaagaatgcgagag-tttacaaaccatgacaatatggaa 908  Q
    |||||| |||||||||||||| | ||||||||||| |||| |||||||||||||| ||| |||||    
T  41662590 gagcttatgctagcaaggtatgttttgaagaatgcaagagttttacaaaccatgaaaatctggaa 41662526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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