View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4604-Insertion-5 (Length: 939)
Name: NF4604-Insertion-5
Description: NF4604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4604-Insertion-5 |
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Alignment Details
Target: chr8 (Bit Score: 559; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 559; E-Value: 0
Query Start/End: Original strand, 8 - 611
Target Start/End: Original strand, 30708661 - 30709265
Alignment:
| Q |
8 |
aacacatacccattttaattgaacaaccccggtaattcttaaaaacaga--gtgatcatagttcaagaaattgaattctatatgacctcatccctccata |
105 |
Q |
| |
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|||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30708661 |
aacacatacccattttaattgaacaaccccagtaattcttaaaaacagaaagtgatcatagttcaagaaattgaattctatatgacctcatccctccata |
30708760 |
T |
|
| Q |
106 |
aattggatcctattgacctctccatccgcaacaactccaacggctaaaaccattctgtaaacctttaggttaatctaagaacaaagattttactgtgaca |
205 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| |
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| T |
30708761 |
aattggatcctattgacctctccatccgcaacaactccaacggctaaaaccattctgtaaacctttaggttaatctaagaactaagattttac-gtgaca |
30708859 |
T |
|
| Q |
206 |
aaacaactgtttgtcgaagaggattaacgactaattatagatcctctccacattggcccttgttatcccctctctaagtttggactggcagtgagactaa |
305 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
30708860 |
aaacaactgtttgtcgaagaggattaacaactaattatagatcctctccacattggcccttgttatcccctctctaagtttggactggcagtaagactaa |
30708959 |
T |
|
| Q |
306 |
caatatcacgatgagtcgtcatgattttaacaaaagttagactttggagcttcacaaaatcatggagtcttcgtgacttagccaaactcacgatcaatcc |
405 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30708960 |
caatatcacgctgagtcgtcatgattttaacaaaagttagactttggagcttcacaaaatcatggagtcttcgtgacttagccaaactcacgatcaatcc |
30709059 |
T |
|
| Q |
406 |
aaacatattttctcttttcttcacatgctatgatcccttgcaacgttactggacgttggatcaaagacataaattttaaaatttgaaccaacggccctgc |
505 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
30709060 |
aaacatattttctcttttcttcacatgctatgatcccttgcaacattactggacgttggatcaaagacataaattttaaaatttgaaccaacggccctgc |
30709159 |
T |
|
| Q |
506 |
aacccttgcaagggatccaatcaatcaacaaatccctcaagctaaaatccaaaagtccctaaatcactgcatatcaattgcatcaaaattaacattcatt |
605 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
30709160 |
aacccttgcaagggatccaatcaatcaacaaatccctcaacctaaaatccaaaagtccctaaatcactgcatatcaattgcatcaaaattaacattcatt |
30709259 |
T |
|
| Q |
606 |
tttcac |
611 |
Q |
| |
|
|||||| |
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|
| T |
30709260 |
tttcac |
30709265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 683 - 939
Target Start/End: Original strand, 30709338 - 30709595
Alignment:
| Q |
683 |
tccatacttgttgaaagtgacagcaagtgtatcaaaattaagcggatcttccaagaaaaacttcaactcagcagctcttttggccgacgaaaacctaaca |
782 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
30709338 |
tccatacttgttgaaagtgacagcaagtgtatcaaaattaagcggatcttccaagaaaaacttcaactcagcagctcttttggccgacgaaaacctaaca |
30709437 |
T |
|
| Q |
783 |
acaggtgctctagtcattccatctctaagcaaaacagaagaagctccaccagaaacatgaatagctttacaccctctattagtacttgcaacaagacacc |
882 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
30709438 |
acaggtgctctggtcattccatctctaagcaaaacagaagaagctccaccagaaacatgaatagctttacaccctctattagtacttgcaacaagacacc |
30709537 |
T |
|
| Q |
883 |
cttcagtggtagccatgggcacagtgtactcaactccatctaac-acagtggacccgc |
939 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
30709538 |
cttcagtggtagccatgggcacagtgtactcaactccatctaacaacagtggacccgc |
30709595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 62; Significance: 3e-26; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 726 - 927
Target Start/End: Complemental strand, 37948423 - 37948222
Alignment:
| Q |
726 |
ggatcttccaagaaaaacttcaactcagcagctcttttggccgacgaaaacctaacaacaggtgctctagtcattccatctctaagcaaaacagaagaag |
825 |
Q |
| |
|
||||| ||||||||||||||||||| || ||||||||| || | ||||| ||||||||||||||||| | ||| ||||||| | | |||| || |
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|
| T |
37948423 |
ggatcctccaagaaaaacttcaactgagaagctcttttagcagtagaaaatctaacaacaggtgctctggacatagcatctctcaaaacaacactctcag |
37948324 |
T |
|
| Q |
826 |
ctccaccagaaacatgaatagctttacaccctctattagtacttgcaacaagacacccttcagtggtagccatgggcacagtgtactcaactccatctaa |
925 |
Q |
| |
|
| ||||||||||||| |||||||||||||||||||||||||| ||||| | ||||||||| || || ||||| || |||||||| |||| |||||| || |
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| T |
37948323 |
caccaccagaaacatatatagctttacaccctctattagtactagcaaccaaacacccttctgtagtcgccattggaacagtgtattcaaatccatccaa |
37948224 |
T |
|
| Q |
926 |
ca |
927 |
Q |
| |
|
|| |
|
|
| T |
37948223 |
ca |
37948222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 713 - 910
Target Start/End: Complemental strand, 39676540 - 39676343
Alignment:
| Q |
713 |
atcaaaattaagcggatcttccaagaaaaacttcaactcagcagctcttttggccgacgaaaacctaacaacaggtgctctagtcattccatctctaagc |
812 |
Q |
| |
|
||||||||| || ||||||||||| || || ||||||| || ||||||||| || || || || || ||||| ||||| ||||||||||| | ||| |
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|
| T |
39676540 |
atcaaaatttagaggatcttccaaaaagaatttcaactgagaagctcttttagcggagttgaatcttacgacaggagctctggtcattccatcacgaagg |
39676441 |
T |
|
| Q |
813 |
aaaacagaagaagctccaccagaaacatgaatagctttacaccctctattagtacttgcaacaagacacccttcagtggtagccatgggcacagtgta |
910 |
Q |
| |
|
| ||| | ||||| ||||||||||||| |||||||||||| ||||| || ||||||||||| | ||| ||||||||||| ||||| ||||| ||||| |
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|
| T |
39676440 |
acaactgccgaagcaccaccagaaacataaatagctttacaacctctgttggtacttgcaactaaacaaccttcagtggttgccattggcacggtgta |
39676343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 822 - 913
Target Start/End: Complemental strand, 10046487 - 10046396
Alignment:
| Q |
822 |
gaagctccaccagaaacatgaatagctttacaccctctattagtacttgcaacaagacacccttcagtggtagccatgggcacagtgtactc |
913 |
Q |
| |
|
||||| ||||| ||||||| |||||||||||| |||||||||||||||||||| | ||| ||||| || || ||||| ||||| |||||||| |
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|
| T |
10046487 |
gaagcaccaccggaaacataaatagctttacaacctctattagtacttgcaaccaaacaaccttccgtcgttgccatcggcaccgtgtactc |
10046396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 822 - 914
Target Start/End: Complemental strand, 10866867 - 10866775
Alignment:
| Q |
822 |
gaagctccaccagaaacatgaatagctttacaccctctattagtacttgcaacaagacacccttcagtggtagccatgggcacagtgtactca |
914 |
Q |
| |
|
||||| ||||| ||||||| |||||||||||| |||||||| || |||||||| | ||| ||||| || || ||||||||||| ||||||||| |
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|
| T |
10866867 |
gaagccccaccggaaacataaatagctttacagcctctattggtgcttgcaaccaaacaaccttcggttgttgccatgggcaccgtgtactca |
10866775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 822 - 914
Target Start/End: Original strand, 10873438 - 10873530
Alignment:
| Q |
822 |
gaagctccaccagaaacatgaatagctttacaccctctattagtacttgcaacaagacacccttcagtggtagccatgggcacagtgtactca |
914 |
Q |
| |
|
||||| ||||| ||||||| |||||||||||| |||||||| || |||||||| | ||| ||||| || || ||||||||||| ||||||||| |
|
|
| T |
10873438 |
gaagcaccaccggaaacataaatagctttacagcctctattggtgcttgcaaccaaacaaccttcggttgttgccatgggcaccgtgtactca |
10873530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 822 - 914
Target Start/End: Original strand, 10878509 - 10878601
Alignment:
| Q |
822 |
gaagctccaccagaaacatgaatagctttacaccctctattagtacttgcaacaagacacccttcagtggtagccatgggcacagtgtactca |
914 |
Q |
| |
|
||||| ||||| ||||||| |||||||||||| |||||||| || |||||||| | ||| ||||| || || ||||||||||| ||||||||| |
|
|
| T |
10878509 |
gaagcaccaccggaaacataaatagctttacagcctctattggtgcttgcaaccaaacaaccttcggttgttgccatgggcaccgtgtactca |
10878601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 822 - 914
Target Start/End: Original strand, 10883580 - 10883672
Alignment:
| Q |
822 |
gaagctccaccagaaacatgaatagctttacaccctctattagtacttgcaacaagacacccttcagtggtagccatgggcacagtgtactca |
914 |
Q |
| |
|
||||| ||||| ||||||| |||||||||||| |||||||| || |||||||| | ||| ||||| || || ||||||||||| ||||||||| |
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|
| T |
10883580 |
gaagcaccaccggaaacataaatagctttacagcctctattggtgcttgcaaccaaacaaccttcggttgttgccatgggcaccgtgtactca |
10883672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 687 - 910
Target Start/End: Original strand, 10887363 - 10887586
Alignment:
| Q |
687 |
tacttgttgaaagtgacagcaagtgtatcaaaattaagcggatcttccaagaaaaacttcaactcagcagctcttttggccgacgaaaacctaacaacag |
786 |
Q |
| |
|
||||||||||||||| || || | ||||||||| | |||||||| || || || ||||||| || |||||||||||| || || || ||||| | |
|
|
| T |
10887363 |
tacttgttgaaagtgtgagagagggaatcaaaattttgaggatcttctaaaaagaatttcaactgagaagctcttttggcggagttgaatcttacaacgg |
10887462 |
T |
|
| Q |
787 |
gtgctctagtcattccatctctaagcaaaacagaagaagctccaccagaaacatgaatagctttacaccctctattagtacttgcaacaagacacccttc |
886 |
Q |
| |
|
| ||||| |||||||| || | |||| ||||| ||||| || || ||||||| |||||||||||| ||||| || || |||||||| | ||| ||||| |
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|
| T |
10887463 |
gggctctggtcattccgtcgcggagcacaacagcggaagcacctccggaaacataaatagctttacagcctctgttggtgcttgcaaccaaacaaccttc |
10887562 |
T |
|
| Q |
887 |
agtggtagccatgggcacagtgta |
910 |
Q |
| |
|
|| || ||||||||||| ||||| |
|
|
| T |
10887563 |
ggttgttgccatgggcaccgtgta |
10887586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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