View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4604-Insertion-6 (Length: 901)
Name: NF4604-Insertion-6
Description: NF4604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4604-Insertion-6 |
 | |
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| [»] scaffold0691 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 309; Significance: 1e-173; HSPs: 21)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 309; E-Value: 1e-173
Query Start/End: Original strand, 8 - 379
Target Start/End: Complemental strand, 2748699 - 2748324
Alignment:
| Q |
8 |
gatgcttctctcagctgcttcacccaagttcttattccatcgttagtgtctgcttcatccgcagcccttctgtctgcatctttgaggaagacttgaatgc |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2748699 |
gatgcttctctcagctgcttcacccaagttcttattccatcgttagtgtctgcttcatccgcagcccttctgtctgcatctttgaggaagacttgaatgc |
2748600 |
T |
|
| Q |
108 |
tctcaagttcatctttgatgtctgaaaaatctctgtgtacacttctcagaagatttgtttcttcttttaggaactggaacacttcccccaggacaaacga |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2748599 |
tctcaagttcatctttgatgtctgaaaaatctctgtgtacacttctcagaagatttgtttcttcttttaggaactggaacacttcccccaggacaaacga |
2748500 |
T |
|
| Q |
208 |
tactgcagtttctgccatttcactctcatctcatatttctaggctgctaccttgcaattatgatgcttggatcatttgtacataatcctagtatgatgtt |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2748499 |
tactgcagtttctgccatttcactctcatctcatatttctaggctgctaccttgcaattacgatgcttggatcatttgtacataatcctagtatgatgtt |
2748400 |
T |
|
| Q |
308 |
ttgc----nnnnnnnnnnccttggagtacagtaactttgaattgttccaaggaaaatttaccttcaaaaagtcaaa |
379 |
Q |
| |
|
|||| || ||||||||||||||||||||| ||||||||| ||||| ||||||||||||||||| |
|
|
| T |
2748399 |
ttgctttttttttttcttccctggagtacagtaactttgaatggttccaaggcaaattaaccttcaaaaagtcaaa |
2748324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 8 - 269
Target Start/End: Original strand, 2856247 - 2856507
Alignment:
| Q |
8 |
gatgcttctctcagctgcttcacccaagttcttattccatcgttagtgtctgcttcatccgcagcccttctgtctgcatctttgaggaagacttgaatgc |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
2856247 |
gatgcttctctcagctgcttcacccaagttcttattccatcattgatgtctgcttcatccgcagcccttatgtctgcatctttgaggaagacttgaatgc |
2856346 |
T |
|
| Q |
108 |
tctcaagttcatctttgatgtctgaaaaatctctgtgtacacttctcagaagatttgtttcttcttttaggaactggaacacttcccccaggacaaacga |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| | |
|
|
| T |
2856347 |
tctcaagttcatctttgatgtctgaaaaatctctgtgtacacctctcaaaagatttgtttcttcttttaggaactggaacacttcccccagggcaaacaa |
2856446 |
T |
|
| Q |
208 |
tactgcagtttctgccatttcactctcatctcatatttctaggctgctaccttgcaattatg |
269 |
Q |
| |
|
|||||||||||||||||||| |||||||| ||||||| ||| ||||||||||| |||||||| |
|
|
| T |
2856447 |
tactgcagtttctgccatttaactctcatatcatattgcta-gctgctaccttacaattatg |
2856507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 632 - 829
Target Start/End: Complemental strand, 2747995 - 2747798
Alignment:
| Q |
632 |
aataactagtggatgttaggttccaaattaccttgtcaagggtaggtaggtgtgcttaccacataactaatgacatgcagccgtatgttttatctcttga |
731 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2747995 |
aataactagtggatgttaggttccaaattaccttgtcaagggtaggtaggtgtgcttaccacataactaatgacatgcagccgtatgttttatctcttga |
2747896 |
T |
|
| Q |
732 |
ctataataaagataataaggatttgttgtgcaaagattattgttgcatggatagctagtatctttattttaatttttatattctttttagatatggga |
829 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2747895 |
ctattataaagataataaggatttgttgtgcaaagattattgttgcatggatagctagtatctttattttaatttttatattctttttagatatggga |
2747798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 178; E-Value: 2e-95
Query Start/End: Original strand, 8 - 241
Target Start/End: Original strand, 2839037 - 2839270
Alignment:
| Q |
8 |
gatgcttctctcagctgcttcacccaagttcttattccatcgttagtgtctgcttcatccgcagcccttctgtctgcatctttgaggaagacttgaatgc |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
2839037 |
gatgcttctctcagctgcttcacccaagttcttattccatcgttgatgtctgcttcatccgcagcccttctgtctgcatctttgaggaagactagaatga |
2839136 |
T |
|
| Q |
108 |
tctcaagttcatctttgatgtctgaaaaatctctgtgtacacttctcagaagatttgtttcttcttttaggaactggaacacttcccccaggacaaacga |
207 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||| | |||||||||||| ||| ||||| | |
|
|
| T |
2839137 |
tctcaagttcatctttgatatctgaaaaatctctgtgtacacctctcagaagatttgtttcttcttttaggaatttgaacacttcccctagggcaaacaa |
2839236 |
T |
|
| Q |
208 |
tactgcagtttctgccatttcactctcatctcat |
241 |
Q |
| |
|
||||||||| |||||||||| |||||||| |||| |
|
|
| T |
2839237 |
tactgcagtctctgccatttaactctcatatcat |
2839270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 174; E-Value: 4e-93
Query Start/End: Original strand, 405 - 582
Target Start/End: Complemental strand, 2748219 - 2748042
Alignment:
| Q |
405 |
aaaggtttattgttctgtaatagtatgacagtaaacaaatatgaatggttgtttaattgaatgattttatttatgctaccccgtttgaaattcaataggc |
504 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
2748219 |
aaaggtttattgttctgtaatagtatgacagtaaacaaatatgaatggttgtttaattgaatgattttatttatgctaccccgtttgaaattcaacaggc |
2748120 |
T |
|
| Q |
505 |
ttaatcaatcagaaatatatttttgaccatcatgcatctgtctgtagattaagactcaagatctgggaccacatccta |
582 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2748119 |
ttaatcaatcagaaatatatttttgaccatcatgcatctgtctgtagattaagactcaagatctgggaccacatccta |
2748042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 170; E-Value: 9e-91
Query Start/End: Original strand, 8 - 244
Target Start/End: Complemental strand, 2768770 - 2768536
Alignment:
| Q |
8 |
gatgcttctctcagctgcttcacccaagttcttattccatcgttagtgtctgcttcatccgcagcccttctgtctgcatctttgaggaagacttgaatgc |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2768770 |
gatgcttctctcagctgcttcacccaagttcttattccatcgttggtgtctgcttcatccgcagcccttctgtctgcatctttgaggaagacttgaatgc |
2768671 |
T |
|
| Q |
108 |
tctcaagttcatctttgatgtctgaaaaatctctgtgtacacttctcagaagatttgtttcttcttttaggaactggaacacttcccccaggacaaacga |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||| |||| ||| || |||| | |
|
|
| T |
2768670 |
tctcaagttcatctttgatgtctgaaaaatctctgtgtacaccactcagcagatttgtttcttcttttaggaattggaaaacttgcccaagagcaaataa |
2768571 |
T |
|
| Q |
208 |
tactgcagtttctgccatttcactctcatctcatatt |
244 |
Q |
| |
|
||| |||||||||||||||| | ||||||||||||| |
|
|
| T |
2768570 |
tacagcagtttctgccatttta--ctcatctcatatt |
2768536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 164; E-Value: 4e-87
Query Start/End: Original strand, 8 - 243
Target Start/End: Complemental strand, 2790059 - 2789824
Alignment:
| Q |
8 |
gatgcttctctcagctgcttcacccaagttcttattccatcgttagtgtctgcttcatccgcagcccttctgtctgcatctttgaggaagacttgaatgc |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| ||||| ||| | |||||||||||||||||||||||||||| |
|
|
| T |
2790059 |
gatgcttctctcagctgcttcacccaagttcttattccatcattggtgtctgcttcatctgcagctcttatatctgcatctttgaggaagacttgaatgc |
2789960 |
T |
|
| Q |
108 |
tctcaagttcatctttgatgtctgaaaaatctctgtgtacacttctcagaagatttgtttcttcttttaggaactggaacacttcccccaggacaaacga |
207 |
Q |
| |
|
||||||||||||||||||||||| |||||||| |||| |||| ||||| ||||||||||||||||||||||| | |||||||||||||||||||| | |
|
|
| T |
2789959 |
tctcaagttcatctttgatgtctaaaaaatctttgtgcacaccactcaggagatttgtttcttcttttaggaattccaacacttcccccaggacaaataa |
2789860 |
T |
|
| Q |
208 |
tactgcagtttctgccatttcactctcatctcatat |
243 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||| |
|
|
| T |
2789859 |
tactgcagtttctgccatttcagtctcatctcatat |
2789824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 143; E-Value: 1e-74
Query Start/End: Original strand, 8 - 250
Target Start/End: Complemental strand, 2797062 - 2796820
Alignment:
| Q |
8 |
gatgcttctctcagctgcttcacccaagttcttattccatcgttagtgtctgcttcatccgcagcccttctgtctgcatctttgaggaagacttgaatgc |
107 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||| || ||||| | |||||| ||||| ||| | ||||||||||||||||| |||||||||| |
|
|
| T |
2797062 |
gatgcttctctcagatgcttcacccaagttcttattccatcattggtgtcggtttcatctgcagctcttgtatctgcatctttgaggaaaacttgaatgc |
2796963 |
T |
|
| Q |
108 |
tctcaagttcatctttgatgtctgaaaaatctctgtgtacacttctcagaagatttgtttcttcttttaggaactggaacacttcccccaggacaaacga |
207 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| |||| |||| ||||| ||||||||||||||||||||||| | ||||||| ||||||| |||| | |
|
|
| T |
2796962 |
tctcaagttcatctgtgatgtctgaaaaatctttgtgcacacgactcagcagatttgtttcttcttttaggaattcaaacactttccccagggcaaataa |
2796863 |
T |
|
| Q |
208 |
tactgcagtttctgccatttcactctcatctcatatttctagg |
250 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
2796862 |
tactgaagtttctgccatttcactctcatctcatattgctagg |
2796820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 139; E-Value: 3e-72
Query Start/End: Original strand, 8 - 238
Target Start/End: Complemental strand, 2806962 - 2806732
Alignment:
| Q |
8 |
gatgcttctctcagctgcttcacccaagttcttattccatcgttagtgtctgcttcatccgcagcccttctgtctgcatctttgaggaagacttgaatgc |
107 |
Q |
| |
|
|||||||| | ||||||||| ||||||||||| |||||||| || |||||||||||||| || || ||||| |||||||||||||||||||||||||||| |
|
|
| T |
2806962 |
gatgcttcgcgcagctgctttacccaagttctaattccatcatttgtgtctgcttcatctgctgctcttctatctgcatctttgaggaagacttgaatgc |
2806863 |
T |
|
| Q |
108 |
tctcaagttcatctttgatgtctgaaaaatctctgtgtacacttctcagaagatttgtttcttcttttaggaactggaacacttcccccaggacaaacga |
207 |
Q |
| |
|
|||||||||||||||||||||||||||| ||| ||||||||| | | |||||||||||||||||||||||||| |||||||||| | ||| |||| | |
|
|
| T |
2806862 |
tctcaagttcatctttgatgtctgaaaattctgtgtgtacaccttttagaagatttgtttcttcttttaggaatcggaacacttcatcaagggcaaataa |
2806763 |
T |
|
| Q |
208 |
tactgcagtttctgccatttcactctcatct |
238 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
2806762 |
tactgcagtttctgccatttcactctcatct |
2806732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 131; E-Value: 2e-67
Query Start/End: Original strand, 8 - 301
Target Start/End: Complemental strand, 5412608 - 5412318
Alignment:
| Q |
8 |
gatgcttctctcagctgcttcacccaagttcttattccatcgttagtgtctgcttcatccgcagcccttctgtctgcatctttgaggaagacttgaatgc |
107 |
Q |
| |
|
||||||||||||| ||||||||||| |||||||||||||| || | ||| |||||||| ||||||||| |||||||||||||||||||| ||||||| |
|
|
| T |
5412608 |
gatgcttctctcatatgcttcacccatgttcttattccatcattggcgtccgcttcatctgcagcccttttgtctgcatctttgaggaaggattgaatga |
5412509 |
T |
|
| Q |
108 |
tctcaagttcatctttgatgtctgaaaaatctctgtgtacacttctcagaagatttgtttcttcttttaggaactggaacacttcccccaggacaaacga |
207 |
Q |
| |
|
| || |||||||||||||||||||||||| |||||||| || | |||| ||||||||||||||| |||||| ||||||| || ||| ||| ||||| | |
|
|
| T |
5412508 |
tttctagttcatctttgatgtctgaaaaa--tctgtgtatacctttcagccgatttgtttcttcttctaggaattggaacagtttcccaagggcaaacaa |
5412411 |
T |
|
| Q |
208 |
tactgcagtttctgccatttcactctcatctcatatttctaggctgctaccttgcaattatgatgcttggatcatttgtacataatcctagtat |
301 |
Q |
| |
|
|||||||||||||||||||| ||||| | |||||||| ||| |||||||||||||||||||| || ||||||||| |||| || || ||||||| |
|
|
| T |
5412410 |
tactgcagtttctgccatttaactcttagctcatattacta-gctgctaccttgcaattatgctgtttggatcatgtgtatattattctagtat |
5412318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 128; E-Value: 1e-65
Query Start/End: Original strand, 8 - 231
Target Start/End: Complemental strand, 2818258 - 2818035
Alignment:
| Q |
8 |
gatgcttctctcagctgcttcacccaagttcttattccatcgttagtgtctgcttcatccgcagcccttctgtctgcatctttgaggaagacttgaatgc |
107 |
Q |
| |
|
||||| ||||||| ||||||||||| |||||||||||||| || | ||| |||||||| || |||||||| ||||||||||||||||||||||| |||| |
|
|
| T |
2818258 |
gatgcatctctcacttgcttcacccatgttcttattccatcattggcgtccgcttcatctgctgcccttctatctgcatctttgaggaagacttggatgc |
2818159 |
T |
|
| Q |
108 |
tctcaagttcatctttgatgtctgaaaaatctctgtgtacacttctcagaagatttgtttcttcttttaggaactggaacacttcccccaggacaaacga |
207 |
Q |
| |
|
| || ||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| ||||||||| || | | | || |
|
|
| T |
2818158 |
tttctagttcatctttgatgtctgaaaaatctctgtgtacacctctcagaagctttgtttcttcttttaggaactgaaacacttccgacaaggctgatga |
2818059 |
T |
|
| Q |
208 |
tactgcagtttctgccatttcact |
231 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
2818058 |
tactgcagtttctgccatttcact |
2818035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 8 - 232
Target Start/End: Complemental strand, 2758915 - 2758691
Alignment:
| Q |
8 |
gatgcttctctcagctgcttcacccaagttcttattccatcgttagtgtctgcttcatccgcagcccttctgtctgcatctttgaggaagacttgaatgc |
107 |
Q |
| |
|
||||||||||||| ||||||||||| ||||||||||| || || || ||||||||||| || |||||||| ||||||||||||||||||| |||||||| |
|
|
| T |
2758915 |
gatgcttctctcatatgcttcacccatgttcttattccttcattggtttctgcttcatctgctgcccttctatctgcatctttgaggaagatttgaatgc |
2758816 |
T |
|
| Q |
108 |
tctcaagttcatctttgatgtctgaaaaatctctgtgtacacttctcagaagatttgtttcttcttttaggaactggaacacttcccccaggacaaacga |
207 |
Q |
| |
|
| ||||||||||||||||||||| | |||||| ||||||||| ||| ||||||||||||| | | || || | ||||||||||| |||| | | | |
|
|
| T |
2758815 |
tttcaagttcatctttgatgtctaagaaatctttgtgtacacctcttagaagatttgtttttaccttaagaagttggaacacttctcccaaggctgatat |
2758716 |
T |
|
| Q |
208 |
tactgcagtttctgccatttcactc |
232 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
2758715 |
tactgcagtttctgccatttcactc |
2758691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 830 - 901
Target Start/End: Complemental strand, 2747773 - 2747702
Alignment:
| Q |
830 |
atgcacgaatggatcacattttatgacaaaaatatagtcattgtgctctctttatctcacaaacataagata |
901 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2747773 |
atgcatgaatggatcacattttatgacaaaaatatagtcattgtgctctctttatctcacaaacataagata |
2747702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 60 - 130
Target Start/End: Complemental strand, 3200596 - 3200526
Alignment:
| Q |
60 |
cttcatccgcagcccttctgtctgcatctttgaggaagacttgaatgctctcaagttcatctttgatgtct |
130 |
Q |
| |
|
||||||| |||||| || |||||||||| ||||| | |||||||||||||||||||||| |||||||||| |
|
|
| T |
3200596 |
cttcatcagcagcctttgtgtctgcatccttgagtgaaacttgaatgctctcaagttcatatttgatgtct |
3200526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 60 - 130
Target Start/End: Original strand, 3357852 - 3357922
Alignment:
| Q |
60 |
cttcatccgcagcccttctgtctgcatctttgaggaagacttgaatgctctcaagttcatctttgatgtct |
130 |
Q |
| |
|
||||||| ||||||||| |||||||||| ||||| ||| ||| ||| ||||||||||||||||||||||| |
|
|
| T |
3357852 |
cttcatcagcagcccttgtgtctgcatccttgagtgagaattggatgatctcaagttcatctttgatgtct |
3357922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 48
Target Start/End: Complemental strand, 2755745 - 2755705
Alignment:
| Q |
8 |
gatgcttctctcagctgcttcacccaagttcttattccatc |
48 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
2755745 |
gatgcttctctcatatgcttcacccaagttcttattccatc |
2755705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 129
Target Start/End: Original strand, 3311128 - 3311179
Alignment:
| Q |
78 |
tgtctgcatctttgaggaagacttgaatgctctcaagttcatctttgatgtc |
129 |
Q |
| |
|
|||| ||||| ||||||||| |||| ||||||||||| |||||||||||||| |
|
|
| T |
3311128 |
tgtcagcatccttgaggaaggcttggatgctctcaaggtcatctttgatgtc |
3311179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 129
Target Start/End: Original strand, 3322727 - 3322778
Alignment:
| Q |
78 |
tgtctgcatctttgaggaagacttgaatgctctcaagttcatctttgatgtc |
129 |
Q |
| |
|
|||| ||||| ||||||||| |||| ||||||||||| |||||||||||||| |
|
|
| T |
3322727 |
tgtcagcatccttgaggaaggcttggatgctctcaaggtcatctttgatgtc |
3322778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 68 - 123
Target Start/End: Complemental strand, 22104335 - 22104280
Alignment:
| Q |
68 |
gcagcccttctgtctgcatctttgaggaagacttgaatgctctcaagttcatcttt |
123 |
Q |
| |
|
||||| ||||| || ||||||||||||||| |||| ||||| |||||||||||||| |
|
|
| T |
22104335 |
gcagctcttctatcagcatctttgaggaaggcttggatgctttcaagttcatcttt |
22104280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 322 - 379
Target Start/End: Complemental strand, 2755636 - 2755579
Alignment:
| Q |
322 |
ccttggagtacagtaactttgaattgttccaaggaaaatttaccttcaaaaagtcaaa |
379 |
Q |
| |
|
|||||| ||||||||||||| ||| || ||||||||| || | ||||||||||||||| |
|
|
| T |
2755636 |
ccttggggtacagtaactttaaatggtgccaaggaaagttaagcttcaaaaagtcaaa |
2755579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 126
Target Start/End: Original strand, 3304440 - 3304497
Alignment:
| Q |
69 |
cagcccttctgtctgcatctttgaggaagacttgaatgctctcaagttcatctttgat |
126 |
Q |
| |
|
||||| ||||||| ||||| ||||||||| ||| ||||||||||| ||||||||||| |
|
|
| T |
3304440 |
cagcctttctgtcagcatccttgaggaaggattggatgctctcaagatcatctttgat |
3304497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0691 (Bit Score: 147; Significance: 5e-77; HSPs: 1)
Name: scaffold0691
Description:
Target: scaffold0691; HSP #1
Raw Score: 147; E-Value: 5e-77
Query Start/End: Original strand, 8 - 226
Target Start/End: Original strand, 6589 - 6807
Alignment:
| Q |
8 |
gatgcttctctcagctgcttcacccaagttcttattccatcgttagtgtctgcttcatccgcagcccttctgtctgcatctttgaggaagacttgaatgc |
107 |
Q |
| |
|
|||||||| |||| |||||||||||||||||||||||||| ||||||||||||||||| |||||| |||||||||||||||||||||||| |||||||| |
|
|
| T |
6589 |
gatgcttccctcatatgcttcacccaagttcttattccatcattagtgtctgcttcatctgcagcctttctgtctgcatctttgaggaagatttgaatgc |
6688 |
T |
|
| Q |
108 |
tctcaagttcatctttgatgtctgaaaaatctctgtgtacacttctcagaagatttgtttcttcttttaggaactggaacacttcccccaggacaaacga |
207 |
Q |
| |
|
| |||||||||||||||||||||| ||||||| ||||||||| |||||||||||||||||||| ||||||||| ||||||| ||| || ||| ||||| | |
|
|
| T |
6689 |
tttcaagttcatctttgatgtctgtaaaatctgtgtgtacacctctcagaagatttgtttctttttttaggaattggaacaattctccgagggcaaacaa |
6788 |
T |
|
| Q |
208 |
tactgcagtttctgccatt |
226 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
6789 |
tactgcagtttctgccatt |
6807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 149
Target Start/End: Complemental strand, 34975137 - 34975042
Alignment:
| Q |
54 |
tgtctgcttcatccgcagcccttctgtctgcatctttgaggaagacttgaatgctctcaagttcatctttgatgtctgaaaaatctctgtgtacac |
149 |
Q |
| |
|
||||| ||||| | ||||| ||||| || | ||||||||||||| |||||||||| || ||||||| ||| ||||||| ||| ||| |||| |||| |
|
|
| T |
34975137 |
tgtctccttcagctgcagctcttctatcagaatctttgaggaaggcttgaatgctttcgagttcatatttaatgtctgcaaattctttgtgaacac |
34975042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 60 - 126
Target Start/End: Original strand, 41947701 - 41947767
Alignment:
| Q |
60 |
cttcatccgcagcccttctgtctgcatctttgaggaagacttgaatgctctcaagttcatctttgat |
126 |
Q |
| |
|
||||||| |||||||| |||||||||| ||||| ||| ||| |||||||||||||||| |||||| |
|
|
| T |
41947701 |
cttcatcaacagcccttgtgtctgcatccttgagaaaggctttgatgctctcaagttcatgtttgat |
41947767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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