View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4604-Insertion-8 (Length: 769)
Name: NF4604-Insertion-8
Description: NF4604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4604-Insertion-8 |
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Alignment Details
Target: chr3 (Bit Score: 421; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 104 - 548
Target Start/End: Original strand, 45596141 - 45596585
Alignment:
| Q |
104 |
ccaacaagagtttgtatctactgatataccttccccatctgttcaatgtgaggagaaaaacgaagagcttcataacaagcacggcagcgaagcttttgaa |
203 |
Q |
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| T |
45596141 |
ccaacaagagtttgtatctactgatataccttccccatctgttcaatgcgaggagaaaaacgaagagcttcataacaagcacggcagcgaagcttttgaa |
45596240 |
T |
|
| Q |
204 |
tatcttgaggtagatggttatttgctagtcgagaatctgatttggaagcttgaataacctttagtcaatcgtaagaaaattgtagagtatgttagagaac |
303 |
Q |
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| T |
45596241 |
tatcttgaggtagatggttatttgctagtcgagaatctgatttggaagcttgaataacctttagtcaatcgtaagaaaattgtagagtatgttagagaac |
45596340 |
T |
|
| Q |
304 |
ttagatattaaggtcaataaatgataaatcaacaataagatagaaatttatatacaaagagattacatactttgaaattattccaaagggctgcaatctc |
403 |
Q |
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| T |
45596341 |
ttagatattaaggtcaataaatgataaatcaacaataagatagaaatttatatacaaagagattacatactttgaaattatcccaaagggctgcaatctc |
45596440 |
T |
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| Q |
404 |
attttgatagtaatccataccagaccagcttttgaattgtttcaccattttagttgcattagccagctccttgggaagtttcttaatgatttttatatca |
503 |
Q |
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| T |
45596441 |
attttgatagtaatccataccagaccagcttttgaattgtttcaccattttaggggcattagccagctccttgggaagtttgttaatgatttttatatca |
45596540 |
T |
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| Q |
504 |
tcagcaagagaactaataaacctcttttcatcaaagatgtctgag |
548 |
Q |
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| T |
45596541 |
tcagcaagagaactaataaacctcttttcgtcaaagatgtctgag |
45596585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 127; E-Value: 4e-65
Query Start/End: Original strand, 639 - 769
Target Start/End: Original strand, 45596664 - 45596794
Alignment:
| Q |
639 |
ataaacctcgagaattaaaataaaaaatacctactatcttgccaaaatgactttttatcaagttctggaattacaagagtagcatttataatgcgagcta |
738 |
Q |
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| T |
45596664 |
ataaaccttgagaattaaaataaaaaatacctactatcttgccaaaatgactttttatcaagttctggaattacaagagtagcatttataatgcgagcta |
45596763 |
T |
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| Q |
739 |
tagctaccatatcacatatctgcagaaaaag |
769 |
Q |
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| T |
45596764 |
tagctaccatatcacatatctgcagaaaaag |
45596794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 37
Target Start/End: Original strand, 45596045 - 45596074
Alignment:
| Q |
8 |
atatgatctcatcctctccaccaatatctg |
37 |
Q |
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| T |
45596045 |
atatgatctcatcctctccaccaatatctg |
45596074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 73; Significance: 6e-33; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 666 - 762
Target Start/End: Original strand, 27152428 - 27152524
Alignment:
| Q |
666 |
tacctactatcttgccaaaatgactttttatcaagttctggaattacaagagtagcatttataatgcgagctatagctaccatatcacatatctgca |
762 |
Q |
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| T |
27152428 |
tacctagtatcttgccaaaatgatcttttatcaagttctggaattacaagagtagcatttatgatacgagctacagctaccatatcacatatctgca |
27152524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 127 - 263
Target Start/End: Original strand, 27151886 - 27152022
Alignment:
| Q |
127 |
atataccttccccatctgttcaatgtgaggagaaaaacgaagagcttcataacaagcacggcagcgaagcttttgaatatcttgaggtagatggttattt |
226 |
Q |
| |
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||||||||| || || |||||||| ||||||| ||||| || |||||||| ||||| ||||| |||||||||||||| ||| ||||||||| ||| || |
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| T |
27151886 |
atatacctttcctatttgttcaatacgaggagagaaacggagtgcttcatagcaagctcggcaacgaagcttttgaatgtctggaggtagattgttgttc |
27151985 |
T |
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| Q |
227 |
gctagtcgagaatctgatttggaagcttgaataacct |
263 |
Q |
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| T |
27151986 |
gctagccgtgaatcggattttgaagcacgaataacct |
27152022 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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