View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4604_low_1 (Length: 274)
Name: NF4604_low_1
Description: NF4604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4604_low_1 |
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| [»] scaffold0767 (1 HSPs) |
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Alignment Details
Target: scaffold0767 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: scaffold0767
Description:
Target: scaffold0767; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 18 - 257
Target Start/End: Complemental strand, 2810 - 2571
Alignment:
| Q |
18 |
actcacgtcaattgttaaatctataacaatatataaaggtaatacctaannnnnnnggtctagatttttcattatttcacttagggaggcttctattttg |
117 |
Q |
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| T |
2810 |
actcacgtcaattgttaaatctataacaatatataaaggtaatacctaatttttttggtctagatttttcattatttcacttagggaggcttctatttta |
2711 |
T |
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| Q |
118 |
ttgtcgctttttaacggatttaaattcgtccttgctatcaaccactcagaatgtgttattttttcaacaagccatgtcatcaaggtcaatacattttatc |
217 |
Q |
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| T |
2710 |
ttgtcgctttttaacggatttaaattcgtccttgctatcaaccactcagaatgtgttattttttcagcaagccatgtcatcaaggtcaatacattttatc |
2611 |
T |
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| Q |
218 |
tcttctatcagtcaaatacctttttctatttctttttcgg |
257 |
Q |
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| T |
2610 |
tcttctatcagtcaaatacctttttctatttctttttcgg |
2571 |
T |
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Target: chr3 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 176 - 257
Target Start/End: Original strand, 36318654 - 36318734
Alignment:
| Q |
176 |
ttttttcaacaagccatgtcatcaaggtcaatacattttatctcttctatcagtcaaatacctttttctatttctttttcgg |
257 |
Q |
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| T |
36318654 |
ttttttcaacaagctatgtcatcaaagtcaatacattttatctctcccatcggtcaaacacc-atttctttttctttttcgg |
36318734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 120 - 220
Target Start/End: Original strand, 24239015 - 24239114
Alignment:
| Q |
120 |
gtcgctttttaacggatttaaattcgtccttgctatcaaccactcagaatgtgttattttttcaacaagccatgtcatcaaggtcaatacattttatctc |
219 |
Q |
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| T |
24239015 |
gtcgctttttaacggacttaaatttgtcactgctctcaacaaatcagaagacggtattttttcaacaagtcatgtcatcaaagtcgat-cattttatctc |
24239113 |
T |
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