View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4605-Insertion-1 (Length: 1070)

Name: NF4605-Insertion-1
Description: NF4605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4605-Insertion-1
NF4605-Insertion-1
[»] chr1 (3 HSPs)
chr1 (744-933)||(24551943-24552135)
chr1 (335-388)||(34345263-34345315)
chr1 (745-805)||(24561999-24562056)
[»] chr4 (4 HSPs)
chr4 (318-401)||(54045339-54045423)
chr4 (427-498)||(54046139-54046210)
chr4 (335-388)||(2922066-2922118)
chr4 (335-388)||(2923316-2923368)
[»] chr2 (4 HSPs)
chr2 (317-388)||(25331844-25331914)
chr2 (336-388)||(25323674-25323725)
chr2 (319-380)||(7739201-7739262)
chr2 (319-380)||(36200871-36200932)
[»] chr5 (1 HSPs)
chr5 (317-388)||(18481254-18481324)


Alignment Details
Target: chr1 (Bit Score: 153; Significance: 2e-80; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 153; E-Value: 2e-80
Query Start/End: Original strand, 744 - 933
Target Start/End: Complemental strand, 24552135 - 24551943
Alignment:
Q  744 tagtttggaagttatcattttcttctccatagtttctcaagggaggatccaacttttgttttgttgagtgttgagataatgataataagtgtatttgaca 843  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||    
T  24552135 tagtttggaagttatcattttcttctccatagtttctcaagggaggatccaagttttgttctgttgagtgttgagataatgataataagtgtatttgaca 24552036  T
Q  844 acacaatacaatatgaagtagaattagc-acaacttttcctt-aaactagcattgcgtgcgtactcttcttaactttcc-acaatactatatt 933  Q
    |||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||| ||||||||||||||| ||| |||||||||    
T  24552035 acacaatacaatatgaagtagaattagcaacaacttttccttaaaactagcattgcgtgcgtaatcttcttaactttccaacactactatatt 24551943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 335 - 388
Target Start/End: Original strand, 34345263 - 34345315
Alignment:
Q  335 accaccctaggtggcaataccactcccataccacccttgtgtggcattttttat 388  Q
    ||||| |||||||||| |||||||||||||||||||||||||||||||||||||    
T  34345263 accactctaggtggca-taccactcccataccacccttgtgtggcattttttat 34345315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 745 - 805
Target Start/End: Complemental strand, 24562056 - 24561999
Alignment:
Q  745 agtttggaagttatcattttcttctccatagtttctcaagggaggatccaacttttgtttt 805  Q
    |||||||||||||| |||||||   |||| ||||||||||| ||||||||| |||||||||    
T  24562056 agtttggaagttattattttct---ccatggtttctcaaggaaggatccaagttttgtttt 24561999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 69; Significance: 2e-30; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 318 - 401
Target Start/End: Original strand, 54045339 - 54045423
Alignment:
Q  318 tgagtgcttatactctgaccaccctaggtggcaataccactcccataccacccttgtgtggca-ttttttattaataacaatgag 401  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||    
T  54045339 tgagtgcttatacgctgaccaccctaggtggcaataccactcccataccacctttgtgtggcatttttttattaataacaatgag 54045423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 5e-25
Query Start/End: Original strand, 427 - 498
Target Start/End: Original strand, 54046139 - 54046210
Alignment:
Q  427 aattaaaaaccacatatgcaatggtataagtgtgtacaattgaaaggtgtgtcgatctatcatttctctaaa 498  Q
    |||||||  ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54046139 aattaaatgccacatatgcagtggtataagtgtgtacaattgaaaggtgtgtcgatctatcatttctctaaa 54046210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 335 - 388
Target Start/End: Original strand, 2922066 - 2922118
Alignment:
Q  335 accaccctaggtggcaataccactcccataccacccttgtgtggcattttttat 388  Q
    ||||| |||||||||| |||||||||||||||||||||||||||||||||||||    
T  2922066 accactctaggtggca-taccactcccataccacccttgtgtggcattttttat 2922118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 335 - 388
Target Start/End: Complemental strand, 2923368 - 2923316
Alignment:
Q  335 accaccctaggtggcaataccactcccataccacccttgtgtggcattttttat 388  Q
    ||||| |||||||||| |||||||||||| ||||||||||||||||||||||||    
T  2923368 accactctaggtggca-taccactcccatgccacccttgtgtggcattttttat 2923316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 0.000000000000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 317 - 388
Target Start/End: Complemental strand, 25331914 - 25331844
Alignment:
Q  317 atgagtgcttatactctgaccaccctaggtggcaataccactcccataccacccttgtgtggcattttttat 388  Q
    |||||| ||||||| |  ||||| |||||||||| |||||||||||||||||||||||||||||||||||||    
T  25331914 atgagtacttatacacataccactctaggtggca-taccactcccataccacccttgtgtggcattttttat 25331844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 336 - 388
Target Start/End: Original strand, 25323674 - 25323725
Alignment:
Q  336 ccaccctaggtggcaataccactcccataccacccttgtgtggcattttttat 388  Q
    |||| |||||||||| |||||||||||||||||||||||||||||||||||||    
T  25323674 ccactctaggtggca-taccactcccataccacccttgtgtggcattttttat 25323725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 319 - 380
Target Start/End: Original strand, 7739201 - 7739262
Alignment:
Q  319 gagtgcttatactctgaccaccctaggtggcaataccactcccataccacccttgtgtggca 380  Q
    |||| ||||||| || |||||| |||||||||||||||| |  |||||||||||||||||||    
T  7739201 gagtccttatacactaaccaccataggtggcaataccacccatataccacccttgtgtggca 7739262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 319 - 380
Target Start/End: Complemental strand, 36200932 - 36200871
Alignment:
Q  319 gagtgcttatactctgaccaccctaggtggcaataccactcccataccacccttgtgtggca 380  Q
    |||| ||||||| || |||||| ||||||||||| |||| |  |||||||||||||||||||    
T  36200932 gagtccttatacactaaccaccataggtggcaatcccacccatataccacccttgtgtggca 36200871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 317 - 388
Target Start/End: Original strand, 18481254 - 18481324
Alignment:
Q  317 atgagtgcttatactctgaccaccctaggtggcaataccactcccataccacccttgtgtggcattttttat 388  Q
    |||||| ||||||| |  ||||| |||||||||| |||||||||||||||| ||||||||||||||||||||    
T  18481254 atgagtacttatacacataccactctaggtggca-taccactcccataccatccttgtgtggcattttttat 18481324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University