View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4605-Insertion-10 (Length: 506)
Name: NF4605-Insertion-10
Description: NF4605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4605-Insertion-10 |
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Alignment Details
Target: chr4 (Bit Score: 87; Significance: 2e-41; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 327 - 413
Target Start/End: Original strand, 1159299 - 1159385
Alignment:
| Q |
327 |
aaaaatgtaacaataaggaaagtatagtacttacttacatagagtttccttactttaattaagaggcgtatcaatcacattacatac |
413 |
Q |
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| T |
1159299 |
aaaaatgtaacaataaggaaagtatagtacttacttacatagagtttccttactttaattaagaggcgtatcaatcacattacatac |
1159385 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 32 - 141
Target Start/End: Original strand, 1158944 - 1159052
Alignment:
| Q |
32 |
tcttcatcttcatgttaa----tgttaagggattcttttagaagaattttattttttgagtgataaagtgaggggaatacaacaaatgaaaagttaagag |
127 |
Q |
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| T |
1158944 |
tcttcatcttcatgttaattaatgttaagggattcttttagaagaattttattttttgagtgataaagtaagggg-----aagaaatgaaaagttaagag |
1159038 |
T |
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| Q |
128 |
tgaaaatagtgtta |
141 |
Q |
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| T |
1159039 |
tgaaaatagtgtta |
1159052 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 280 - 331
Target Start/End: Original strand, 1159214 - 1159268
Alignment:
| Q |
280 |
tataatactcatataga---gaaaaagctgtaatgtttctttcagttgccaaaaa |
331 |
Q |
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| T |
1159214 |
tataatactcatatagatcagaaaaagctgtaatgtttctttcagttgccaaaaa |
1159268 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 458 - 506
Target Start/End: Original strand, 1159407 - 1159458
Alignment:
| Q |
458 |
tcccaagaaaatgacattattattttt---tggttaggaaaatgacatttgc |
506 |
Q |
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| T |
1159407 |
tcccaagaaaatgacattattattattatttggttaggaaaatgacatttgc |
1159458 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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