View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4605-Insertion-12 (Length: 205)
Name: NF4605-Insertion-12
Description: NF4605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4605-Insertion-12 |
 | |
|
| [»] chr6 (2 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 169; Significance: 8e-91; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 8 - 205
Target Start/End: Original strand, 23287456 - 23287649
Alignment:
| Q |
8 |
ccccctcctcaccataacaaagcttttaacaatcggtaccacaatccctctttgtgcaatcctcgacatcctgattatatttctgccttagttttctgtc |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
23287456 |
ccccctcctcaccataacaaagcttttaacacttggtaccacaatccctctttgtgcaatcctcaacatcctgattatatttctgccttagttttctgtc |
23287555 |
T |
|
| Q |
108 |
ataggatctttgatcgttccttattcatctactgtcgtggtataacttataactttttatatatatgtggatgacattattctggctacctcctccga |
205 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23287556 |
ataggatctttgatcgttccttattcatctactgtcgtggtataacttataactttt----tatatgtggatgacattattctggctacctcctccga |
23287649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 75 - 202
Target Start/End: Original strand, 23280782 - 23280905
Alignment:
| Q |
75 |
atcctgattatatttctgccttagttttctgtcataggatctttgatcgttccttattcatctactgtcgtggtataacttataactttttatatatatg |
174 |
Q |
| |
|
||||||||||| || || |||||| ||||||||||||||||||||||| ||||||||||||||| || || ||||||||||||| |||| |||||| |
|
|
| T |
23280782 |
atcctgattatgttgctaccttaggtttctgtcataggatctttgatctttccttattcatctaatgccgaggtataacttatatatttt----tatatg |
23280877 |
T |
|
| Q |
175 |
tggatgacattattctggctacctcctc |
202 |
Q |
| |
|
||||||||||||||||||||||| |||| |
|
|
| T |
23280878 |
tggatgacattattctggctaccacctc |
23280905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 8 - 62
Target Start/End: Original strand, 41914310 - 41914363
Alignment:
| Q |
8 |
ccccctcctcaccataacaaagcttttaacaatcggtaccacaatccctctttgt |
62 |
Q |
| |
|
|||||||||||||||||| | |||||||| | ||||||||||||||||||||||| |
|
|
| T |
41914310 |
ccccctcctcaccataacga-gcttttaaaactcggtaccacaatccctctttgt |
41914363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 8 - 62
Target Start/End: Original strand, 32227631 - 32227684
Alignment:
| Q |
8 |
ccccctcctcaccataacaaagcttttaacaatcggtaccacaatccctctttgt |
62 |
Q |
| |
|
|||||||||||||||||| | |||||||| | ||||||||||||||||||||||| |
|
|
| T |
32227631 |
ccccctcctcaccataacga-gcttttaaaactcggtaccacaatccctctttgt |
32227684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University