View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4605-Insertion-3 (Length: 979)

Name: NF4605-Insertion-3
Description: NF4605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4605-Insertion-3
NF4605-Insertion-3
[»] chr2 (6 HSPs)
chr2 (8-973)||(14916175-14917165)
chr2 (492-550)||(30652351-30652407)
chr2 (492-550)||(9184020-9184076)
chr2 (492-550)||(17973953-17974009)
chr2 (492-550)||(25483373-25483429)
chr2 (492-550)||(25490979-25491035)
[»] chr4 (12 HSPs)
chr4 (26-341)||(48515818-48516137)
chr4 (580-837)||(48515280-48515539)
chr4 (621-820)||(12701532-12701732)
chr4 (349-567)||(48515572-48515785)
chr4 (489-541)||(12875783-12875833)
chr4 (494-541)||(8028935-8028980)
chr4 (351-387)||(12701267-12701303)
chr4 (522-566)||(12701414-12701458)
chr4 (494-552)||(33467666-33467722)
chr4 (492-550)||(37263166-37263222)
chr4 (493-550)||(19103412-19103467)
chr4 (494-523)||(19907749-19907778)
[»] chr6 (4 HSPs)
chr6 (578-834)||(21794923-21795180)
chr6 (340-565)||(21785149-21785368)
chr6 (492-552)||(16834764-16834822)
chr6 (494-550)||(19993013-19993067)
[»] chr1 (9 HSPs)
chr1 (582-764)||(19074859-19075042)
chr1 (582-764)||(19122749-19122932)
chr1 (340-565)||(19075078-19075297)
chr1 (340-565)||(19122968-19123187)
chr1 (155-321)||(6788609-6788775)
chr1 (492-550)||(25845193-25845249)
chr1 (492-550)||(10136762-10136818)
chr1 (426-567)||(6786091-6786229)
chr1 (426-566)||(6789347-6789484)
[»] chr7 (3 HSPs)
chr7 (494-550)||(12802717-12802771)
chr7 (494-541)||(10391699-10391744)
chr7 (492-541)||(15975314-15975361)
[»] chr8 (3 HSPs)
chr8 (492-550)||(4541018-4541074)
chr8 (816-874)||(19487993-19488052)
chr8 (492-550)||(4241608-4241664)
[»] chr5 (6 HSPs)
chr5 (492-550)||(39519822-39519878)
chr5 (492-550)||(558206-558262)
chr5 (492-550)||(36425075-36425131)
chr5 (492-550)||(36940792-36940848)
chr5 (492-550)||(41998152-41998208)
chr5 (489-550)||(25688197-25688256)
[»] chr3 (6 HSPs)
chr3 (492-550)||(16452924-16452980)
chr3 (492-550)||(23664724-23664780)
chr3 (492-550)||(3674076-3674132)
chr3 (492-550)||(8884680-8884736)
chr3 (492-550)||(18468649-18468705)
chr3 (494-550)||(12970414-12970468)


Alignment Details
Target: chr2 (Bit Score: 674; Significance: 0; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 674; E-Value: 0
Query Start/End: Original strand, 8 - 973
Target Start/End: Original strand, 14916175 - 14917165
Alignment:
Q  8 accatgatacaagaaagctacaatgttgttgattagcttaccgttgtacttgaaaattacaatgatgcatggaataatctattaaattttcctaaataat 107  Q
    ||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14916175 accatgatacaagaaagctacaatgatgttgattagcttaccattgtacttgaaaattacaatgatgcatggaataatctattaaattttcctaaataat 14916274  T
Q  108 acatgtgattttcaaccatattgatcgattgagatagagtcatagctattacaaagtaaataa---gatgatcatatgagatatgaagaaatttgactgg 204  Q
    ||||||||||||||||||||||||||||||| |||  ||||||| ||||||||||||||||||   ||||||||||||||||||||||||||||||||||    
T  14916275 acatgtgattttcaaccatattgatcgattgtgat--agtcataactattacaaagtaaataagatgatgatcatatgagatatgaagaaatttgactgg 14916372  T
Q  205 tccattgacaaaagaattagta----agagagagagattaactaatcatttgacgaaatgattaatcagagagggctttgaaaacctcagaaagaatgag 300  Q
    ||||||||| ||||||||||||    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  14916373 tccattgacgaaagaattagtaagagagagagagagattaactaatcatttgacgaaatgattagtcagagagggctttgaaaacctcagaaagaatgag 14916472  T
Q  301 actagtgccaagaataattttctcatatgagggtaacccaaatagg-ttaaagggtaataacaacttatatagag---atgtggatcatgctaaggataa 396  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||   |||||||||||||||| |||||    
T  14916473 actagtgccaagaataattttctcatatgagggtaacccaaataggtttaaagggtaataacaacttatatagagatcatgtggatcatgctaaagataa 14916572  T
Q  397 ataaatttaaagtctcaatcgtatatttagagcaagatatcacgtagtgtgtgaaaatgttgaattaaatttcttactgagtcatataccccatatggag 496  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||||    
T  14916573 ataaatttaaagtctcaatcatatatttagagcaagatatcacgtagtgtgtgaaaatgttgaattaaatttcttaatgagttatatatcccatatggag 14916672  T
Q  497 tggagtacatagctacatgagtactctcttgatagactcacctatgtgaatgtgaaggtttggctgcttccaatga----tagac--------------- 577  Q
    |||||||| ||||||||||||||  |||||||||||||||  ||||||||||||||||||||||||||||||||||    | |||                   
T  14916673 tggagtacgtagctacatgagta--ctcttgatagactcatttatgtgaatgtgaaggtttggctgcttccaatgaaattttgacagcgtttctaaagcg 14916770  T
Q  578 -tcactatactgggataacatgtatggccatgacacacgtgcttttgaactacaccttgaaatatcgagggtgtaatgttgtctgagatatagttcaaga 676  Q
     |||||||||| ||||||| ||||||| | |||||||||||||||||||||||||||||||| || |||||||   ||||||||||||||||||||||||    
T  14916771 ttcactatact-ggataacgtgtatggtcgtgacacacgtgcttttgaactacaccttgaaagattgagggtg---tgttgtctgagatatagttcaaga 14916866  T
Q  677 ctaagagtcactctagtataattggaagcatcatcactatgcaatatatcatgtctacgaacactactgtttatgttcaatcttatgttggatcaccttg 776  Q
    |||||| ||||||||||||||| |||||||||||||||| ||||||  |||||||||  ||||||||||||||||||||||||||||||||||||||||     
T  14916867 ctaagaatcactctagtataatcggaagcatcatcactacgcaatagttcatgtctataaacactactgtttatgttcaatcttatgttggatcacctta 14916966  T
Q  777 ttgctcgatgaaatagttttaataaaatctagtggaagattgttgatgattttattaaaataaacaataaaataagaaatgcattttcatttatttatgg 876  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  14916967 ttgctcgatgaaatagttttaataaaatccagtggaagattgttgatgattttattaaaat-aacaataaaataagaaatgcattttcatttatttatgg 14917065  T
Q  877 gttttctaatatttggattccaacaccaagcgtattggtttcatgtttt-aatgcctgtgtttttaatatacaat--attggtaacctttttctttgcat 973  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| | ||||||||   ||||||||||||||||||||||    
T  14917066 gttttctaatatttggattccaacaccaagcgtattgttttcatgttttaaatgcctgtgttttaattatacaattatttggtaacctttttctttgcat 14917165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 492 - 550
Target Start/End: Complemental strand, 30652407 - 30652351
Alignment:
Q  492 tggagtggagtacatagctacatgagtactctcttgatagactcacctatgtgaatgtg 550  Q
    ||||||||||||| |||||||| |||||||||  ||||||||||||||||| |||||||    
T  30652407 tggagtggagtacctagctacaggagtactct--tgatagactcacctatgcgaatgtg 30652351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 492 - 550
Target Start/End: Original strand, 9184020 - 9184076
Alignment:
Q  492 tggagtggagtacatagctacatgagtactctcttgatagactcacctatgtgaatgtg 550  Q
    ||||||||||||| |||||||| |||||  ||||||||||||||||||||  |||||||    
T  9184020 tggagtggagtacctagctacaggagta--ctcttgatagactcacctatacgaatgtg 9184076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 492 - 550
Target Start/End: Original strand, 17973953 - 17974009
Alignment:
Q  492 tggagtggagtacatagctacatgagtactctcttgatagactcacctatgtgaatgtg 550  Q
    ||||||||||||| |||||||| |||||  ||||||||||||||||||||  |||||||    
T  17973953 tggagtggagtacctagctacaggagta--ctcttgatagactcacctatacgaatgtg 17974009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 492 - 550
Target Start/End: Original strand, 25483373 - 25483429
Alignment:
Q  492 tggagtggagtacatagctacatgagtactctcttgatagactcacctatgtgaatgtg 550  Q
    ||||||||||||||||||||||||||  | ||||||||| ||||||||||  |||||||    
T  25483373 tggagtggagtacatagctacatgag--cactcttgatatactcacctatacgaatgtg 25483429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 492 - 550
Target Start/End: Original strand, 25490979 - 25491035
Alignment:
Q  492 tggagtggagtacatagctacatgagtactctcttgatagactcacctatgtgaatgtg 550  Q
    ||||||||||||||||||||||||||  | ||||||||| ||||||||||  |||||||    
T  25490979 tggagtggagtacatagctacatgag--cactcttgatatactcacctatacgaatgtg 25491035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 150; Significance: 9e-79; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 150; E-Value: 9e-79
Query Start/End: Original strand, 26 - 341
Target Start/End: Complemental strand, 48516137 - 48515818
Alignment:
Q  26 tacaatgttgttgattagcttaccgttgtacttgaaaattacaatgatg---catggaataatctattaaattttcctaaataatacatgtgattttcaa 122  Q
    ||||||| |||||||||| |||||  |||| ||||||||||||||||||   |||||||||||||  || |||||||||||||||| || |||||| ||     
T  48516137 tacaatgatgttgattagtttaccaatgtatttgaaaattacaatgatgatgcatggaataatctgctagattttcctaaataataaatatgatttccag 48516038  T
Q  123 ccatattgatcgattgagatagagtcatagctattacaaagtaaataagatgatcatatgagatatgaagaaatttgactggtccattgacaaaagaatt 222  Q
    |||||| ||||||||| ||||||| ||| || |||||||| ||||||||||||||||||||| | | |||||| ||||||  ||| || || |||| |||    
T  48516037 ccatatcgatcgattgtgatagagccatggcaattacaaattaaataagatgatcatatgaggtctaaagaaacttgactaatcctttaaccaaaggatt 48515938  T
Q  223 agtaagagagagagattaactaatcatttgacgaaatgattaatcagagagggctttg-aaaacctcagaaagaatgagactagtgccaagaataatttt 321  Q
    ||||||||||| ||||| |||||| ||||||||||||||||| |||||||||| |||| ||||||| ||||||||||||||||||| ||| | |||||||    
T  48515937 agtaagagagatagattgactaattatttgacgaaatgattagtcagagagggttttgaaaaaccttagaaagaatgagactagtgtcaatagtaatttt 48515838  T
Q  322 ctcatatgagggtaacccaa 341  Q
    ||||||||||||||||||||    
T  48515837 ctcatatgagggtaacccaa 48515818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 132; E-Value: 5e-68
Query Start/End: Original strand, 580 - 837
Target Start/End: Complemental strand, 48515539 - 48515280
Alignment:
Q  580 actatactgggataacatgtatggccatgacacacgtgcttttgaactacaccttgaaatatcgagggtgtaatgttgtctgagatatagttcaagacta 679  Q
    |||| ||||||||||| ||||||||| | |  |||| ||| ||||||||||| |||||| || ||| |||||||||||||||||||| ||||||||||||    
T  48515539 actacactgggataacgtgtatggccgtaatgcacgggctattgaactacactttgaaagattgagcgtgtaatgttgtctgagatagagttcaagacta 48515440  T
Q  680 agagtcactctagtataattggaagcatcatcactatgcaatatatcatgtctacgaacactactgtttatgttcaatcttatgtt-ggatcaccttgtt 778  Q
     |||||||||| ||||| | |||||||| ||||||||||||||  ||| ||||||| |||||| |||||||||||||||||||||| |||||||||| ||    
T  48515439 cgagtcactcttgtatattcggaagcattatcactatgcaatagttcaagtctacggacactattgtttatgttcaatcttatgttgggatcaccttatt 48515340  T
Q  779 gctcgatgaaatag-ttttaataaaatctagtggaagattgttgatgattttattaaaat 837  Q
    |||||||||||  | |||||||||||||||||||  ||||||||||||||||||||||||    
T  48515339 gctcgatgaaaaggtttttaataaaatctagtgggggattgttgatgattttattaaaat 48515280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 85; E-Value: 5e-40
Query Start/End: Original strand, 621 - 820
Target Start/End: Original strand, 12701532 - 12701732
Alignment:
Q  621 ttgaactacaccttgaaatatcgagggtgtaatgttgtctgagatatagttcaagactaagagtcactctagtataattggaagcatcatcactatgcaa 720  Q
    ||||||| |||| ||||| || ||| ||||||| |||||||||||  |||||||||||| |||||||||||||||| | | |||||||||||||| ||||    
T  12701532 ttgaactgcaccctgaaagattgagcgtgtaatattgtctgagattgagttcaagactacgagtcactctagtatattcgaaagcatcatcactacgcaa 12701631  T
Q  721 tatatcatgtctacgaacactactgtttatgttcaatcttatgttggatcaccttgttgctcgatgaaat-agttttaataaaatctagtggaagattgt 819  Q
    ||  ||| ||||||| |||||| |||||||||||||||||||||||||| | |||  |||| |||||||| | ||||||||||||  |||||| ||||||    
T  12701632 tagttcaagtctacggacactattgtttatgttcaatcttatgttggattatcttactgcttgatgaaatgaattttaataaaattaagtggaggattgt 12701731  T
Q  820 t 820  Q
    |    
T  12701732 t 12701732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 349 - 567
Target Start/End: Complemental strand, 48515785 - 48515572
Alignment:
Q  349 aaagggtaataacaacttatatagagatgtggatcatgctaaggataaataaatttaaagtctcaatcgta----tatttagagcaagatatcacgtagt 444  Q
    ||||||||||||||||||||||||| ||||||||||||||||| ||       ||| | |||||| || ||    | ||| || || ||||||| |||||    
T  48515785 aaagggtaataacaacttatatagaaatgtggatcatgctaagaatt------ttttatgtctcattcatagtattttttggaccatgatatcatgtagt 48515692  T
Q  445 gtgtgaaaatgttgaattaaatttcttactgagtcatataccccatatggagtggagtacatagctacatgagtactctcttgatagactcacctatgtg 544  Q
    |  || ||| |||||||||| ||||||| |||||  ||||| |||||||||||||||||| |||||| || | ||||||  ||||||||||| |||||||    
T  48515691 gaatggaaaggttgaattaa-tttcttaatgagttctatactccatatggagtggagtacgtagctatatcaatactct--tgatagactcaactatgtg 48515595  T
Q  545 aatgtgaaggtttggctgcttcc 567  Q
    |||||| ||||||||| ||||||    
T  48515594 aatgtggaggtttggccgcttcc 48515572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 489 - 541
Target Start/End: Complemental strand, 12875833 - 12875783
Alignment:
Q  489 atatggagtggagtacatagctacatgagtactctcttgatagactcacctat 541  Q
    ||||||||||||||||||||||||||| |||  ||||||||||||||||||||    
T  12875833 atatggagtggagtacatagctacatgcgta--ctcttgatagactcacctat 12875783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 494 - 541
Target Start/End: Original strand, 8028935 - 8028980
Alignment:
Q  494 gagtggagtacatagctacatgagtactctcttgatagactcacctat 541  Q
    |||||||||||||||||||||| |||  ||||||||||||||||||||    
T  8028935 gagtggagtacatagctacatgggta--ctcttgatagactcacctat 8028980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 351 - 387
Target Start/End: Original strand, 12701267 - 12701303
Alignment:
Q  351 agggtaataacaacttatatagagatgtggatcatgc 387  Q
    ||||||||||||||||||||||||||||| |||||||    
T  12701267 agggtaataacaacttatatagagatgtgaatcatgc 12701303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 522 - 566
Target Start/End: Original strand, 12701414 - 12701458
Alignment:
Q  522 ctcttgatagactcacctatgtgaatgtgaaggtttggctgcttc 566  Q
    ||||||||||||||||||||||||||||| |||||| || |||||    
T  12701414 ctcttgatagactcacctatgtgaatgtggaggttttgccgcttc 12701458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 494 - 552
Target Start/End: Original strand, 33467666 - 33467722
Alignment:
Q  494 gagtggagtacatagctacatgagtactctcttgatagactcacctatgtgaatgtgaa 552  Q
    |||||||| ||||||||||| |||||||||  ||||||||||||||||  |||||||||    
T  33467666 gagtggagcacatagctacaggagtactct--tgatagactcacctatacgaatgtgaa 33467722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 492 - 550
Target Start/End: Original strand, 37263166 - 37263222
Alignment:
Q  492 tggagtggagtacatagctacatgagtactctcttgatagactcacctatgtgaatgtg 550  Q
    ||||||||||||| |||||||| |||||  ||||||||||||||||||||  |||||||    
T  37263166 tggagtggagtacctagctacaggagta--ctcttgatagactcacctatacgaatgtg 37263222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 493 - 550
Target Start/End: Complemental strand, 19103467 - 19103412
Alignment:
Q  493 ggagtggagtacatagctacatgagtactctcttgatagactcacctatgtgaatgtg 550  Q
    |||||||| |||||||||||| |||||  ||||||||||||||||||||  |||||||    
T  19103467 ggagtggaatacatagctacaggagta--ctcttgatagactcacctatacgaatgtg 19103412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 494 - 523
Target Start/End: Complemental strand, 19907778 - 19907749
Alignment:
Q  494 gagtggagtacatagctacatgagtactct 523  Q
    ||||||||||||||||||||||||||||||    
T  19907778 gagtggagtacatagctacatgagtactct 19907749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 79; Significance: 2e-36; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 578 - 834
Target Start/End: Original strand, 21794923 - 21795180
Alignment:
Q  578 tcactatactgggataacatgtatggccatgacacacgtgcttttgaactacaccttgaaatatcgagggtgtaatgttgtctgagatatagttcaagac 677  Q
    |||||||||||||||||| ||||||||| | |  |||| || ||||||||||||||||||| || ||| ||||||||||||| |||||| ||||||||||    
T  21794923 tcactatactgggataacgtgtatggccgtaaggcacgggcctttgaactacaccttgaaagattgagtgtgtaatgttgtcagagatagagttcaagac 21795022  T
Q  678 taagagtcactctagtataattggaagcatc-atcactatgcaatatatcatgtctacgaacactactgtttatgttcaatcttatgttggatcaccttg 776  Q
    |   | ||||||||||||| |  | |||||| ||||||| ||||||  ||| ||||||| |||||| |||||||| |||||||||||||| || | |||     
T  21795023 t---actcactctagtatattctggagcatcaatcactacgcaatagttcaagtctacggacactattgtttatgctcaatcttatgttgaatta-ctta 21795118  T
Q  777 ttgctcgatgaaa----tagttttaataaaatctagtggaagattgttgatgattttattaa 834  Q
     ||||||||||||    |  |||||||||||||||||||  ||||||||  |||||||||||    
T  21795119 ctgctcgatgaaatgattttttttaataaaatctagtgggggattgttggagattttattaa 21795180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 340 - 565
Target Start/End: Original strand, 21785149 - 21785368
Alignment:
Q  340 aaataggtt-aaagggtaataacaacttatatagagatgtggatcatgctaaggataaataaatttaaagtctcaatcgta--tatttagagcaagatat 436  Q
    ||||||||| ||||||||||||||||||||||| |||||| || ||||||||| ||       ||| | |||||| || ||  | ||| | |||||||||    
T  21785149 aaataggttcaaagggtaataacaacttatataaagatgtagaacatgctaagaatt------ttttatgtctcattcatagctttttggggcaagatat 21785242  T
Q  437 cacgtagtgtgtgaaaatgttgaattaaatttcttactgagtcatataccccatatggagtggagtacatagctacatgagtactctcttgatagactca 536  Q
     | ||||||  |||||| ||||||| |||||||||| ||||| |||||| |||||||||||||||||  ||||||||| | ||  |||||||||||||||    
T  21785243 aatgtagtgaatgaaaaggttgaat-aaatttcttaatgagttatatactccatatggagtggagtatgtagctacatcaata--ctcttgatagactca 21785339  T
Q  537 cctatgtgaatgtgaaggtttggctgctt 565  Q
    ||||||||||| || ||||||||| ||||    
T  21785340 cctatgtgaatatggaggtttggcggctt 21785368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 492 - 552
Target Start/End: Original strand, 16834764 - 16834822
Alignment:
Q  492 tggagtggagtacatagctacatgagtactctcttgatagactcacctatgtgaatgtgaa 552  Q
    ||||||||||||| |||||||| |||||| ||  ||||||||||||||||| |||||||||    
T  16834764 tggagtggagtacctagctacaggagtaccct--tgatagactcacctatgcgaatgtgaa 16834822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 494 - 550
Target Start/End: Original strand, 19993013 - 19993067
Alignment:
Q  494 gagtggagtacatagctacatgagtactctcttgatagactcacctatgtgaatgtg 550  Q
    ||||||||||||||||||||||| ||  ||||||| ||||||||||||  |||||||    
T  19993013 gagtggagtacatagctacatgatta--ctcttgaaagactcacctatacgaatgtg 19993067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 76; Significance: 1e-34; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 582 - 764
Target Start/End: Complemental strand, 19075042 - 19074859
Alignment:
Q  582 tatactgggataacatgtatggccatgacacacgtgcttttgaactacaccttgaaatatcgagggtgtaatgttgtctgagatatagttcaagactaag 681  Q
    |||||||||||||| ||||||||| | |  |||| |||||||||||||||||||||| || ||| ||||||||||||| |||||| |||||||||||  |    
T  19075042 tatactgggataacgtgtatggccgtaaggcacgggcttttgaactacaccttgaaagattgagtgtgtaatgttgtcagagatagagttcaagactgcg 19074943  T
Q  682 agtcactctagtataattggaagcatc-atcactatgcaatatatcatgtctacgaacactactgtttatgttcaatcttatgt 764  Q
    ||||||||||||||| |  | |||||| ||||||| ||||||  ||| ||||||| ||| || |||||||| ||||||||||||    
T  19074942 agtcactctagtatattctggagcatcaatcactacgcaatagttcaagtctacggacaatattgtttatgctcaatcttatgt 19074859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 582 - 764
Target Start/End: Complemental strand, 19122932 - 19122749
Alignment:
Q  582 tatactgggataacatgtatggccatgacacacgtgcttttgaactacaccttgaaatatcgagggtgtaatgttgtctgagatatagttcaagactaag 681  Q
    |||||||||||||| ||||||||| | |  |||| |||||||||||||||||||||| || ||| ||||||||||||| |||||| |||||||||||  |    
T  19122932 tatactgggataacgtgtatggccgtaaggcacgggcttttgaactacaccttgaaagattgagtgtgtaatgttgtcagagatagagttcaagactgcg 19122833  T
Q  682 agtcactctagtataattggaagcatc-atcactatgcaatatatcatgtctacgaacactactgtttatgttcaatcttatgt 764  Q
    ||||||||||||||| |  | |||||| ||||||| ||||||  ||| ||||||| ||| || |||||||| ||||||||||||    
T  19122832 agtcactctagtatattctggagcatcaatcactacgcaatagttcaagtctacggacaatattgtttatgctcaatcttatgt 19122749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 340 - 565
Target Start/End: Complemental strand, 19075297 - 19075078
Alignment:
Q  340 aaataggtt-aaagggtaataacaacttatatagagatgtggatcatgctaaggataaataaatttaaagtctcaatcgta--tatttagagcaagatat 436  Q
    ||||||||| ||||||||||||||||||||||||||||||||| ||||||||| ||       ||| | |||||| || ||  | ||| | | | |||||    
T  19075297 aaataggttcaaagggtaataacaacttatatagagatgtggaacatgctaagaatt------tttgatgtctcattcataactttttggggaatgatat 19075204  T
Q  437 cacgtagtgtgtgaaaatgttgaattaaatttcttactgagtcatataccccatatggagtggagtacatagctacatgagtactctcttgatagactca 536  Q
     | ||||||  |||||| |||| || |||||||||| ||||| |||||| |||||||||||||||||   |||||||| | ||||||  |||||||||||    
T  19075203 aatgtagtgaatgaaaaggttggat-aaatttcttaatgagttatatactccatatggagtggagtatgaagctacatcaatactct--tgatagactca 19075107  T
Q  537 cctatgtgaatgtgaaggtttggctgctt 565  Q
    |||||||||||||| ||||||||| ||||    
T  19075106 cctatgtgaatgtggaggtttggccgctt 19075078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 340 - 565
Target Start/End: Complemental strand, 19123187 - 19122968
Alignment:
Q  340 aaataggtt-aaagggtaataacaacttatatagagatgtggatcatgctaaggataaataaatttaaagtctcaatcgta--tatttagagcaagatat 436  Q
    ||||||||| ||||||||||||||||||||||||||||||||| ||||||||| ||       ||| | |||||| || ||  | ||| | | | |||||    
T  19123187 aaataggttcaaagggtaataacaacttatatagagatgtggaacatgctaagaatt------tttgatgtctcattcataactttttggggaatgatat 19123094  T
Q  437 cacgtagtgtgtgaaaatgttgaattaaatttcttactgagtcatataccccatatggagtggagtacatagctacatgagtactctcttgatagactca 536  Q
     | ||||||  |||||| |||| || |||||||||| ||||| |||||| |||||||||||||||||   |||||||| | ||||||  |||||||||||    
T  19123093 aatgtagtgaatgaaaaggttggat-aaatttcttaatgagttatatactccatatggagtggagtatgaagctacatcaatactct--tgatagactca 19122997  T
Q  537 cctatgtgaatgtgaaggtttggctgctt 565  Q
    |||||||||||||| ||||||||| ||||    
T  19122996 cctatgtgaatgtggaggtttggccgctt 19122968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 155 - 321
Target Start/End: Original strand, 6788609 - 6788775
Alignment:
Q  155 attacaaagtaaataagatgatcatatgagatatgaagaaatttgactggtccattgacaaaagaattagtaagagagagagattaactaatcatttgac 254  Q
    |||| |||||||||||||||| |||||||  | | ||||||||||| |||| | ||||| |||  |||||||||||||| |||||   | || |||||||    
T  6788609 attataaagtaaataagatgaacatatgatgtttaaagaaatttgattggtactttgacgaaaagattagtaagagagaaagattggttgattatttgac 6788708  T
Q  255 gaaatgattaatcagagagggctttgaaaacctcagaaagaatgagactagtgccaagaataatttt 321  Q
    ||||||| ||   ||||||||||||| |||||||| ||||||||| |||||||  || |||||||||    
T  6788709 gaaatgaatagatagagagggctttgtaaacctcaaaaagaatgaaactagtgtgaataataatttt 6788775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 492 - 550
Target Start/End: Complemental strand, 25845249 - 25845193
Alignment:
Q  492 tggagtggagtacatagctacatgagtactctcttgatagactcacctatgtgaatgtg 550  Q
    ||||||||||||| |||||||| |||||||||  ||||||||||||||||| |||||||    
T  25845249 tggagtggagtacctagctacaggagtactct--tgatagactcacctatgcgaatgtg 25845193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 492 - 550
Target Start/End: Complemental strand, 10136818 - 10136762
Alignment:
Q  492 tggagtggagtacatagctacatgagtactctcttgatagactcacctatgtgaatgtg 550  Q
    ||||||||||||| |||||||| |||||  ||||||||||||||||||||  |||||||    
T  10136818 tggagtggagtacctagctacaggagta--ctcttgatagactcacctatacgaatgtg 10136762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 426 - 567
Target Start/End: Original strand, 6786091 - 6786229
Alignment:
Q  426 gagcaagatatcacgtagtgtgtgaaaatgttgaattaaatttcttactgagtcatataccccatatggagtggagtacatagctacatgagtactctct 525  Q
    ||||| ||||||| ||||||  || |||||||||||||| ||| ||| ||| |  | ||| ||||||| |||| ||||  ||||||||| | ||||||      
T  6786091 gagcatgatatcatgtagtgaatggaaatgttgaattaagttt-ttaatgaattttgtactccatatgtagtgtagtatgtagctacatcaatactct-- 6786187  T
Q  526 tgatagactcacctatgtgaatgtgaaggtttggctgcttcc 567  Q
    | |||||||||||| ||| |||||| ||||||||| ||||||    
T  6786188 taatagactcacctctgtaaatgtggaggtttggccgcttcc 6786229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 426 - 566
Target Start/End: Original strand, 6789347 - 6789484
Alignment:
Q  426 gagcaagatatcacgtagtgtgtgaaaatgttgaattaaatttcttactgagtcatataccccatatggagtggagtacatagctacatgagtactctct 525  Q
    ||||| ||||||| ||| ||  || |||||||||||||| ||| ||| ||| |  | ||| ||||||| |||| ||||  ||||||||| | ||||||      
T  6789347 gagcatgatatcatgtaatgaatggaaatgttgaattaagttt-ttaatgaattttgtactccatatgtagtgtagtatgtagctacatcaatactct-- 6789443  T
Q  526 tgatagactcacctatgtgaatgtgaaggtttggctgcttc 566  Q
    | |||||||||||| |||||||||| ||||||||| |||||    
T  6789444 taatagactcacctttgtgaatgtggaggtttggccgcttc 6789484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000006; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 494 - 550
Target Start/End: Complemental strand, 12802771 - 12802717
Alignment:
Q  494 gagtggagtacatagctacatgagtactctcttgatagactcacctatgtgaatgtg 550  Q
    ||||||||||||||||||||||||||  ||||||||||||||||||||  |||||||    
T  12802771 gagtggagtacatagctacatgagta--ctcttgatagactcacctatacgaatgtg 12802717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 494 - 541
Target Start/End: Original strand, 10391699 - 10391744
Alignment:
Q  494 gagtggagtacatagctacatgagtactctcttgatagactcacctat 541  Q
    |||||||||||||||||||| |||||  ||||||||||||||||||||    
T  10391699 gagtggagtacatagctacaggagta--ctcttgatagactcacctat 10391744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 492 - 541
Target Start/End: Complemental strand, 15975361 - 15975314
Alignment:
Q  492 tggagtggagtacatagctacatgagtactctcttgatagactcacctat 541  Q
    ||||||| ||||||||||||||||||||  |||||||||||||| |||||    
T  15975361 tggagtgaagtacatagctacatgagta--ctcttgatagactcgcctat 15975314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000009; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 492 - 550
Target Start/End: Original strand, 4541018 - 4541074
Alignment:
Q  492 tggagtggagtacatagctacatgagtactctcttgatagactcacctatgtgaatgtg 550  Q
    ||||||||||||| |||||||| |||||||||  |||||||||||||| ||||||||||    
T  4541018 tggagtggagtacctagctacaagagtactct--tgatagactcacctttgtgaatgtg 4541074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 816 - 874
Target Start/End: Original strand, 19487993 - 19488052
Alignment:
Q  816 ttgttgatgattttattaaaataaacaataaaat--aagaaatgcattttcatttatttat 874  Q
    |||||||||||||||||||||| |||||||||||  || |||||||||||||| |||||||    
T  19487993 ttgttgatgattttattaaaat-aacaataaaataaaataaatgcattttcatatatttat 19488052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 492 - 550
Target Start/End: Original strand, 4241608 - 4241664
Alignment:
Q  492 tggagtggagtacatagctacatgagtactctcttgatagactcacctatgtgaatgtg 550  Q
    ||||||||||||| |||||||| |||||  ||||||||||||||||||||  |||||||    
T  4241608 tggagtggagtacctagctacaggagta--ctcttgatagactcacctatacgaatgtg 4241664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000009; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 492 - 550
Target Start/End: Complemental strand, 39519878 - 39519822
Alignment:
Q  492 tggagtggagtacatagctacatgagtactctcttgatagactcacctatgtgaatgtg 550  Q
    ||||||||||||| |||||||| |||||||||  ||||||||||||||||| |||||||    
T  39519878 tggagtggagtacctagctacaggagtactct--tgatagactcacctatgcgaatgtg 39519822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 492 - 550
Target Start/End: Complemental strand, 558262 - 558206
Alignment:
Q  492 tggagtggagtacatagctacatgagtactctcttgatagactcacctatgtgaatgtg 550  Q
    ||||||||||||| |||||||| |||||  ||||||||||||||||||||  |||||||    
T  558262 tggagtggagtacctagctacaggagta--ctcttgatagactcacctatacgaatgtg 558206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 492 - 550
Target Start/End: Complemental strand, 36425131 - 36425075
Alignment:
Q  492 tggagtggagtacatagctacatgagtactctcttgatagactcacctatgtgaatgtg 550  Q
    ||||||||||||| |||||||| |||||  ||||||||||||||||||||  |||||||    
T  36425131 tggagtggagtacctagctacaggagta--ctcttgatagactcacctatacgaatgtg 36425075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 492 - 550
Target Start/End: Original strand, 36940792 - 36940848
Alignment:
Q  492 tggagtggagtacatagctacatgagtactctcttgatagactcacctatgtgaatgtg 550  Q
    ||||||||||||| |||||||| |||||  ||||||||||||||||||||  |||||||    
T  36940792 tggagtggagtacctagctacaggagta--ctcttgatagactcacctatacgaatgtg 36940848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 492 - 550
Target Start/End: Complemental strand, 41998208 - 41998152
Alignment:
Q  492 tggagtggagtacatagctacatgagtactctcttgatagactcacctatgtgaatgtg 550  Q
    ||||||||||||| |||||||| |||||  ||||||||||||||||||||  |||||||    
T  41998208 tggagtggagtacctagctacaggagta--ctcttgatagactcacctatacgaatgtg 41998152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 489 - 550
Target Start/End: Original strand, 25688197 - 25688256
Alignment:
Q  489 atatggagtggagtacatagctacatgagtactctcttgatagactcacctatgtgaatgtg 550  Q
    ||||| ||||||||||||||||| |||||||  ||||| |||||||||| ||| ||||||||    
T  25688197 atatgaagtggagtacatagctaaatgagta--ctcttaatagactcacttatatgaatgtg 25688256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000009; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 492 - 550
Target Start/End: Original strand, 16452924 - 16452980
Alignment:
Q  492 tggagtggagtacatagctacatgagtactctcttgatagactcacctatgtgaatgtg 550  Q
    ||||||||||||| |||||||| |||||||||  |||||||||||||| ||||||||||    
T  16452924 tggagtggagtacctagctacaagagtactct--tgatagactcacctttgtgaatgtg 16452980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 492 - 550
Target Start/End: Original strand, 23664724 - 23664780
Alignment:
Q  492 tggagtggagtacatagctacatgagtactctcttgatagactcacctatgtgaatgtg 550  Q
    ||||||||||||| |||||||| |||||||||  ||||||||||||||||| |||||||    
T  23664724 tggagtggagtacctagctacaggagtactct--tgatagactcacctatgcgaatgtg 23664780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 492 - 550
Target Start/End: Complemental strand, 3674132 - 3674076
Alignment:
Q  492 tggagtggagtacatagctacatgagtactctcttgatagactcacctatgtgaatgtg 550  Q
    ||||||||||||| |||||||| |||||  ||||||||||||||||||||  |||||||    
T  3674132 tggagtggagtacctagctacaggagta--ctcttgatagactcacctatacgaatgtg 3674076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 492 - 550
Target Start/End: Complemental strand, 8884736 - 8884680
Alignment:
Q  492 tggagtggagtacatagctacatgagtactctcttgatagactcacctatgtgaatgtg 550  Q
    ||||||||||||| |||||||| |||||  ||||||||||||||||||||  |||||||    
T  8884736 tggagtggagtacctagctacaggagta--ctcttgatagactcacctatacgaatgtg 8884680  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 492 - 550
Target Start/End: Complemental strand, 18468705 - 18468649
Alignment:
Q  492 tggagtggagtacatagctacatgagtactctcttgatagactcacctatgtgaatgtg 550  Q
    ||||||||||||| |||||||| |||||  ||||||||||||||||||||  |||||||    
T  18468705 tggagtggagtacctagctacaggagta--ctcttgatagactcacctatacgaatgtg 18468649  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 494 - 550
Target Start/End: Original strand, 12970414 - 12970468
Alignment:
Q  494 gagtggagtacatagctacatgagtactctcttgatagactcacctatgtgaatgtg 550  Q
    ||||||||||||||||||||||||||  || ||||| |||||||||||  |||||||    
T  12970414 gagtggagtacatagctacatgagta--ctattgatggactcacctatacgaatgtg 12970468  T

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