View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4605-Insertion-4 (Length: 865)
Name: NF4605-Insertion-4
Description: NF4605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4605-Insertion-4 |
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Alignment Details
Target: chr5 (Bit Score: 550; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 550; E-Value: 0
Query Start/End: Original strand, 254 - 843
Target Start/End: Original strand, 33116549 - 33117137
Alignment:
| Q |
254 |
acaaggtaaatatgcaatcttcctctttccataggccatttttaactcatttccataaactttgcatgatagctagtcaagagtattatatatgcagctg |
353 |
Q |
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| T |
33116549 |
acaaggtaaatatgcaatcttcctctttccataggccatttttaactcatttccataaaatttgcatgatagctaatcaagagtattatatatgcagctg |
33116648 |
T |
|
| Q |
354 |
ttaccaggtgcatgcttgatctcaaatgacatgacaaagaaccaatgtcaaaaaggacacagatcatggtatacacaaggatgtcctagcaaattgggtt |
453 |
Q |
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| T |
33116649 |
ttaccaggtgcatgcttgatctcaaatgacatgacaaagaaccaatgtcaaaaaggacacagatcatggtatacacaaggatgtcctagcaaattgggtt |
33116748 |
T |
|
| Q |
454 |
ggcttgcactgatcggattggctctctatatactgttcttttcacctggaatggggactgttccgtgggtcataaactctgagatttaccctttaaggta |
553 |
Q |
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| T |
33116749 |
ggcttgcactgattggattggctctctatatactgttcttttcacctggaatggggactgttccatgggtcataaactctgagatttaccctttaaggta |
33116848 |
T |
|
| Q |
554 |
tagaggagtctgtggaggaatggcttcaacaagtgtttggatctcaaaccttattgtttctcaatcctttttatctctcacacaagctattggagttgca |
653 |
Q |
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| T |
33116849 |
tagaggagtctgtggaggaatggcttcaacaagtgtttggatctcaaaccttattgtttctcaatcctttttatctctcacacaagctattggagttgca |
33116948 |
T |
|
| Q |
654 |
tggacattcatgttgtttggaattgttgctgtcatagcaattttctttgtcctcgttttcgtacctgaaaccaaaggtgttccaattgaggaagtggaga |
753 |
Q |
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| T |
33116949 |
tggacattcatgttgtttggaattgttgctgtcatagcaagttcctttgtcctcgttttcgtaccagaaaccaaaggtgttccaattgaggaagtggaga |
33117048 |
T |
|
| Q |
754 |
agatgcttcaacaaaggactctgcaattcaagttttggaataagagaatcacctctcagaaagggttgagtcagtttgagttagtttatg |
843 |
Q |
| |
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| T |
33117049 |
agatgcttcaacaaaggactctgcaattcaagttttggaataagagaatcgcctctcag-aagggttgagtcagtttgagttagtttatg |
33117137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 6 - 205
Target Start/End: Original strand, 33116353 - 33116552
Alignment:
| Q |
6 |
catatatttcatcgataaaaccgggagaaagaagctagctttgattagtttgtttggagttgtcttatcacttgtgcttcttactgtcactttccgacaa |
105 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
33116353 |
catatatttcatcgataaaaccgggagaaagaagctagctttgattagtttgtttggagttgtcttatcacttgtgcttcttactgtcactttctgacaa |
33116452 |
T |
|
| Q |
106 |
accgaaactcattctccaatgataagtgaaatagaaacttatcgtttcaacaacacctgtcctgcttttactccttctcgtggcggatgggactgcacaa |
205 |
Q |
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| T |
33116453 |
accgaaactcattctccaatgataagtgaaatagaaacttatcatttcaacaacacctgtcctgcttttactccttctcgtggcggatgggactgcacaa |
33116552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 489 - 629
Target Start/End: Original strand, 33119996 - 33120136
Alignment:
| Q |
489 |
ttcttttcacctggaatggggactgttccgtgggtcataaactctgagatttaccctttaaggtatagaggagtctgtggaggaatggcttcaacaagtg |
588 |
Q |
| |
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||||||||||| |||||||| || ||||| ||||| || |||||||| || |||||||||||||||||||| | ||||||||||| || ||||||| | |
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| T |
33119996 |
ttcttttcaccaggaatgggaacggttccatgggttatcaactctgaaatacaccctttaaggtatagaggaatatgtggaggaatagcatcaacaacag |
33120095 |
T |
|
| Q |
589 |
tttggatctcaaaccttattgtttctcaatcctttttatct |
629 |
Q |
| |
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| ||| |||| ||||| |||||||||||||||||||||||| |
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| T |
33120096 |
tgtgggtctctaacctcattgtttctcaatcctttttatct |
33120136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 6 - 297
Target Start/End: Complemental strand, 1084059 - 1083768
Alignment:
| Q |
6 |
catatatttcatcgataaaaccgggagaaagaagctagctttgattagtttgtttggagttgtcttatcacttgtgcttcttactgtcactttccgacaa |
105 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1084059 |
catatatttcattgataaaaccgggagaaagaagctagctttgattagtttgtttggagttgtcttatcacttgtgcttcttactgtcactttccgacaa |
1083960 |
T |
|
| Q |
106 |
accgaaactcattctccaatgataagtgaaatagaaacttatcgtttcaacaacacctgtcctgcttttactccttctcgtggcggatgggactgcacaa |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1083959 |
accgaaactcattctccaatgataagtgaaatagaaacttatcgtttcaacaacacctgtcctgcttttactccttctcgtggcggatgggactgcacaa |
1083860 |
T |
|
| Q |
206 |
cgtgtttaaaggcttcaccaaaatgtggattttgtgcatctgactctaacaaggtaaatatgcaatcttcctctttccataggccattttta |
297 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1083859 |
cgtgtttaaaggcttcaccaaaatgtggattttgtgcatctgactctaacaaggtaaatatgcaatcttcctctttccataggccattttta |
1083768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 489 - 619
Target Start/End: Complemental strand, 21492014 - 21491884
Alignment:
| Q |
489 |
ttcttttcacctggaatggggactgttccgtgggtcataaactctgagatttaccctttaaggtatagaggagtctgtggaggaatggcttcaacaagtg |
588 |
Q |
| |
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||||| || ||||||||||| || ||||| ||||| | |||||||| || || || || |||||||||||| | ||||||||||| || ||||||| | |
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| T |
21492014 |
ttcttctcgcctggaatgggaacagttccatgggttgttaactctgaaatctatccattgaggtatagaggaatatgtggaggaatagcatcaacaacag |
21491915 |
T |
|
| Q |
589 |
tttggatctcaaaccttattgtttctcaatc |
619 |
Q |
| |
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| ||| | || |||||| ||||||||||||| |
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| T |
21491914 |
tgtgggtttccaaccttgttgtttctcaatc |
21491884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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