View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4605-Insertion-5 (Length: 837)

Name: NF4605-Insertion-5
Description: NF4605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4605-Insertion-5
NF4605-Insertion-5
[»] chr6 (6 HSPs)
chr6 (7-666)||(32826359-32827019)
chr6 (706-810)||(32827053-32827155)
chr6 (347-444)||(6978500-6978598)
chr6 (357-445)||(7591053-7591141)
chr6 (706-776)||(32827248-32827318)
chr6 (364-432)||(33450813-33450881)
[»] chr1 (2 HSPs)
chr1 (339-433)||(7439080-7439173)
chr1 (356-430)||(31577995-31578069)
[»] chr4 (2 HSPs)
chr4 (347-448)||(9603867-9603968)
chr4 (383-445)||(29491944-29492006)
[»] chr8 (5 HSPs)
chr8 (347-447)||(39039698-39039798)
chr8 (347-413)||(9045699-9045765)
chr8 (384-444)||(29026240-29026300)
chr8 (356-447)||(27157699-27157790)
chr8 (341-439)||(44173149-44173247)
[»] chr7 (4 HSPs)
chr7 (339-446)||(44453593-44453700)
chr7 (368-445)||(17115879-17115956)
chr7 (392-447)||(2391578-2391633)
chr7 (360-446)||(22713451-22713536)
[»] chr2 (3 HSPs)
chr2 (347-442)||(24166791-24166886)
chr2 (358-444)||(28816182-28816267)
chr2 (340-446)||(37267707-37267813)
[»] chr3 (4 HSPs)
chr3 (358-447)||(7925337-7925426)
chr3 (356-445)||(33513403-33513492)
chr3 (392-443)||(26665538-26665589)
chr3 (358-439)||(25123224-25123305)
[»] chr5 (4 HSPs)
chr5 (368-447)||(13271486-13271565)
chr5 (369-447)||(27549736-27549814)
chr5 (359-455)||(35323589-35323685)
chr5 (360-427)||(17223081-17223148)


Alignment Details
Target: chr6 (Bit Score: 483; Significance: 0; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 483; E-Value: 0
Query Start/End: Original strand, 7 - 666
Target Start/End: Original strand, 32826359 - 32827019
Alignment:
Q  7 atttattggagttataaggttggcaagttaattaaattgaaagaatggcagcaacaataaaattgtaccgatatttactatttaaagnnnnnnnnctaaa 106  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||        |||||    
T  32826359 atttattggagttataaggttggcaagttaattaagttgaaagaatggcagcaacaataaaattgtactgatatttactatttaaagaaaaaaaactaaa 32826458  T
Q  107 tgtagcatttgcttgacaagttgaacattgcccaagtctgagtagaagaggaagaaaagctttcctaacacagtaacatgtgactgacaatgaccaaaca 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32826459 tgtagcatttgcttgacaagttgaacattgcccaagtctgagtagaagaggaagaaaagctttcctaacacagtaacatgtgactgacaatgaccaaaca 32826558  T
Q  207 tgtctaacacagcaatgtattttcactatttttt-gtaaaagcaatgtattgttgttactttcaaa----aggagtttcatattttactgtttaannnnn 301  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||   |||||||||    |||| ||||| ||||||||||||||         
T  32826559 tgtctaacacagcaatgtattttcactatttttttgtaaaagcaatgtattgtt---actttcaaatccaaggaatttcaaattttactgtttaatttct 32826655  T
Q  302 nnnnnccattgagcttctcacgcgtcctatacagtttcgaaccgtataaaaattccataaaacctccaaaaactcgttgagatatttaaaattttagaat 401  Q
         ||||||||||||| |||||| |||||| ||| ||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  32826656 tttt-ccattgagcttcttacgcgttctatacggttccgaaccgcataaaaattccataaaacctccaaaaactcgttgaaatatttaaaattttagaat 32826754  T
Q  402 ctaaataggacgcgcgggaaactcataggatggaaaaaataatggcttcaaattttaatgagcaagttattaagaaaaagtatgtaacacttttttcttt 501  Q
      |||||| ||||||| ||||||||||| ||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  32826755 tcaaatagaacgcgcgagaaactcatagaatggaaaaagtaatggcttcaaattttaattagcaagttattaagaaaaagtatgtaacacttttttcttt 32826854  T
Q  502 gtttcttaattattttggaagacataatacttatttttatactattttctacctatatttcttccaaagaaaattaaaatagaagaattgtttaaataca 601  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  32826855 gtttcttaattattttggaagatataatacttatttttatactattttctacctatatttctttcaaagaaaattaaaatagaagaattgtttaaataca 32826954  T
Q  602 aatatatttgctttgggcttttatctatcaagtctcttcactccctgaacattttcatccagctt 666  Q
    ||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32826955 aatatatatgccttgggcttttatctatcaagtctcttcactccctgaacattttcatccagctt 32827019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 706 - 810
Target Start/End: Original strand, 32827053 - 32827155
Alignment:
Q  706 gttaatctcatatccaactagcacctttgaatttatgccaaaagttcaaggcattttacaatgccaaaattacttagaactttttgggatttgtataagt 805  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| | ||||||  ||| ||||||||||    
T  32827053 gttaatctcatatccaactagcacctttgaatttatgcaaaaagttcaaggcattttacaatgccgaaattactttggactttt--ggacttgtataagt 32827150  T
Q  806 gaccg 810  Q
     ||||    
T  32827151 taccg 32827155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 347 - 444
Target Start/End: Original strand, 6978500 - 6978598
Alignment:
Q  347 ataaaaattccataaaacctccaaaaact-cgttgagatatttaaaattttagaatctaaataggacgcgcgggaaactcataggatggaaaaaataat 444  Q
    ||||||| ||||||||||||||||||| | |||||| |||||| | ||||||||||| ||||||||||| || ||||||||||||||||||||| ||||    
T  6978500 ataaaaactccataaaacctccaaaaattacgttgaaatattttagattttagaatccaaataggacgcacgagaaactcataggatggaaaaagtaat 6978598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 357 - 445
Target Start/End: Complemental strand, 7591141 - 7591053
Alignment:
Q  357 cataaaacctccaaaaactcgttgagatatttaaaattttagaatctaaataggacgcgcgggaaactcataggatggaaaaaataatg 445  Q
    ||||||||||| |||||| |||||| ||||||   |||||||||||| |||||||||||||||||| ||||||||||| |||| |||||    
T  7591141 cataaaacctcaaaaaacacgttgaaatatttcggattttagaatcttaataggacgcgcgggaaattcataggatgggaaaagtaatg 7591053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 706 - 776
Target Start/End: Original strand, 32827248 - 32827318
Alignment:
Q  706 gttaatctcatatccaactagcacctttgaatttatgccaaaagttcaaggcattttacaatgccaaaatt 776  Q
    |||| ||||||||||| |||||||||||| |||||||| |||||||||| ||||||||||||||| |||||    
T  32827248 gttattctcatatccagctagcacctttggatttatgcgaaaagttcaacgcattttacaatgccgaaatt 32827318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 364 - 432
Target Start/End: Complemental strand, 33450881 - 33450813
Alignment:
Q  364 cctccaaaaactcgttgagatatttaaaattttagaatctaaataggacgcgcgggaaactcataggat 432  Q
    ||||||||||| |||||| ||||||  ||||||||||||  ||||||||||||  ||| ||||||||||    
T  33450881 cctccaaaaacacgttgaaatatttcgaattttagaatccgaataggacgcgcaagaagctcataggat 33450813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 2e-17; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 339 - 433
Target Start/End: Original strand, 7439080 - 7439173
Alignment:
Q  339 cgaaccgtataaaaattccataaaacctccaaaaactcgttgagatatttaaaattttagaatctaaataggacgcgcgggaaactcataggatg 433  Q
    |||||||||||||| | ||||||||||| ||||||| |||||| |||||| | |||||||||| | ||||||||||||| ||| |||||||||||    
T  7439080 cgaaccgtataaaa-tcccataaaaccttcaaaaacacgttgaaatattttagattttagaatttgaataggacgcgcgagaatctcataggatg 7439173  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 356 - 430
Target Start/End: Original strand, 31577995 - 31578069
Alignment:
Q  356 ccataaaacctccaaaaactcgttgagatatttaaaattttagaatctaaataggacgcgcgggaaactcatagg 430  Q
    ||||||||||||||||||| |||||| ||||||   ||||||||||| ||||||| |||||| ||| ||||||||    
T  31577995 ccataaaacctccaaaaacacgttgaaatatttcggattttagaatccaaatagggcgcgcgagaagctcatagg 31578069  T

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Target: chr4 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 347 - 448
Target Start/End: Original strand, 9603867 - 9603968
Alignment:
Q  347 ataaaaattccataaaacctccaaaaactcgttgagatatttaaaattttagaatctaaataggacgcgcgggaaactcataggatggaaaaaataatgg 446  Q
    |||||||  ||||||||||||||||||  |||| | |||||| | |||||||||| | ||||||||||||| |||  ||||||| ||| |||||||||||    
T  9603867 ataaaaaccccataaaacctccaaaaatacgttaaaatatttcagattttagaatttgaataggacgcgcgagaaggtcatagggtgggaaaaataatgg 9603966  T
Q  447 ct 448  Q
    ||    
T  9603967 ct 9603968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 383 - 445
Target Start/End: Original strand, 29491944 - 29492006
Alignment:
Q  383 atatttaaaattttagaatctaaataggacgcgcgggaaactcataggatggaaaaaataatg 445  Q
    |||||| |||||||| ||||| ||||| ||||||| |||||| ||| | ||||||||||||||    
T  29491944 atattttaaattttaaaatctgaatagaacgcgcgagaaacttataaggtggaaaaaataatg 29492006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 347 - 447
Target Start/End: Complemental strand, 39039798 - 39039698
Alignment:
Q  347 ataaaaattccataaaacctccaaaaactcgttgagatatttaaaattttagaatctaaataggacgcgcgggaaactcataggatggaaaaaataatgg 446  Q
    |||||| | ||||||||| || |||||| |||||| || |||   |||||||||||||||||||||||||  ||| || |||||||| ||||||||||||    
T  39039798 ataaaattcccataaaacttctaaaaacacgttgaaatgtttcggattttagaatctaaataggacgcgcaagaagcttataggatgaaaaaaataatgg 39039699  T
Q  447 c 447  Q
    |    
T  39039698 c 39039698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 347 - 413
Target Start/End: Original strand, 9045699 - 9045765
Alignment:
Q  347 ataaaaattccataaaacctccaaaaactcgttgagatatttaaaattttagaatctaaataggacg 413  Q
    ||||||| |||||||||||||||||||| |||||| |||||| | |||||  ||||| |||||||||    
T  9045699 ataaaaactccataaaacctccaaaaacacgttgaaatatttcagatttttaaatctgaataggacg 9045765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 384 - 444
Target Start/End: Original strand, 29026240 - 29026300
Alignment:
Q  384 tatttaaaattttagaatctaaataggacgcgcgggaaactcataggatggaaaaaataat 444  Q
    ||||| |||||||||||| | |||||||  |||| |||||||||||||| |||||||||||    
T  29026240 tatttcaaattttagaatttgaataggatacgcgagaaactcataggatagaaaaaataat 29026300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 356 - 447
Target Start/End: Original strand, 27157699 - 27157790
Alignment:
Q  356 ccataaaacctccaaaaactcgttgagatatttaaaattttagaatctaaataggacgcgcgggaaactcataggatggaaaaaataatggc 447  Q
    |||||||| |||||||| | |||||| ||| ||   |||||||||||  ||||| |||| || |||||||||||| |||||||| |||||||    
T  27157699 ccataaaatctccaaaaccacgttgaaataattcggattttagaatccgaatagcacgcacgagaaactcatagggtggaaaaagtaatggc 27157790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 341 - 439
Target Start/End: Complemental strand, 44173247 - 44173149
Alignment:
Q  341 aaccgtataaaaattccataaaacctccaaaaactcgttgagatatttaaaattttagaatctaaataggacgcgcgggaaactcataggatggaaaaa 439  Q
    ||||||| ||||| | ||||||| |||||||||  |||||| ||||||   |||||||||||| |||||| |||||| |||  | ||| ||||||||||    
T  44173247 aaccgtaaaaaaacttcataaaatctccaaaaatacgttgaaatatttctgattttagaatctgaatagggcgcgcgagaattttataagatggaaaaa 44173149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 339 - 446
Target Start/End: Complemental strand, 44453700 - 44453593
Alignment:
Q  339 cgaaccgtataaaaattccataaaacctccaaaaactcgttgagatatttaaaattttagaatctaaataggacgcgcgggaaactcataggatggaaaa 438  Q
    ||||| ||||||| | |||||||||| ||||||||| |||||| ||||||  ||||||||||||  |||||||||  || |||||| ||||| || ||||    
T  44453700 cgaactgtataaagactccataaaacttccaaaaacacgttgaaatatttcgaattttagaatccgaataggacgtacgagaaacttatagggtgaaaaa 44453601  T
Q  439 aataatgg 446  Q
    | ||||||    
T  44453600 agtaatgg 44453593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 368 - 445
Target Start/End: Complemental strand, 17115956 - 17115879
Alignment:
Q  368 caaaaactcgttgagatatttaaaattttagaatctaaataggacgcgcgggaaactcataggatggaaaaaataatg 445  Q
    ||||||| |||||| |||||| | |||||| |||| |||||| ||||| || ||||||||||||| |||||| |||||    
T  17115956 caaaaacacgttgaaatattttagattttaaaatccaaatagaacgcgaggaaaactcataggatagaaaaagtaatg 17115879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 392 - 447
Target Start/End: Complemental strand, 2391633 - 2391578
Alignment:
Q  392 attttagaatctaaataggacgcgcgggaaactcataggatggaaaaaataatggc 447  Q
    ||||||||||| ||||||  |||||| ||||||||||||||| ||||| |||||||    
T  2391633 attttagaatccaaatagtgcgcgcgagaaactcataggatgaaaaaagtaatggc 2391578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 360 - 446
Target Start/End: Original strand, 22713451 - 22713536
Alignment:
Q  360 aaaacctccaaaaactcgttgagatatttaaaattttagaatctaaataggacgcgcgggaaactcataggatggaaaaaataatgg 446  Q
    ||||||||||||||| |||||| |||||| | |||||| |||  ||||||| ||| || |||||||||| | |||||||| ||||||    
T  22713451 aaaacctccaaaaacacgttgaaatatttcagattttaaaattcaaatagg-cgcacgagaaactcataaggtggaaaaagtaatgg 22713536  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 347 - 442
Target Start/End: Complemental strand, 24166886 - 24166791
Alignment:
Q  347 ataaaaattccataaaacctccaaaaactcgttgagatatttaaaattttagaatctaaataggacgcgcgggaaactcataggatggaaaaaata 442  Q
    ||||||| ||||||||||||| ||||||  ||||| ||||||  ||||| ||||||  |||||| |||| | |||||||||||| |||||||||||    
T  24166886 ataaaaactccataaaacctctaaaaacatgttgaaatatttcgaatttaagaatccgaatagggcgcgtgagaaactcatagggtggaaaaaata 24166791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 358 - 444
Target Start/End: Original strand, 28816182 - 28816267
Alignment:
Q  358 ataaaacctccaaaaactcgttgagatatttaaaattttagaatctaaataggacgcgcgggaaactcataggatggaaaaaataat 444  Q
    ||||||||||||||| | |||||| ||||||||||||||| ||| | |||||| ||| || |||||| ||| | |||||||| ||||    
T  28816182 ataaaacctccaaaa-cacgttgaaatatttaaaattttataatttgaatagggcgcacgagaaacttataaggtggaaaaagtaat 28816267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 340 - 446
Target Start/End: Complemental strand, 37267813 - 37267707
Alignment:
Q  340 gaaccgtataaaaattccataaaacctccaaaaactcgttgagatatttaaaattttagaatctaaataggacgcgcgggaaactcataggatggaaaaa 439  Q
    |||| ||||||||||  |||||||||||| ||||| |||| | ||||||   ||||||||||| ||||||| | | || ||| |||||| | ||||||||    
T  37267813 gaactgtataaaaatctcataaaacctcccaaaacacgttaaaatatttcggattttagaatccaaatagggcacacgagaagctcataaggtggaaaaa 37267714  T
Q  440 ataatgg 446  Q
     ||||||    
T  37267713 gtaatgg 37267707  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000005; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 358 - 447
Target Start/End: Complemental strand, 7925426 - 7925337
Alignment:
Q  358 ataaaacctccaaaaactcgttgagatatttaaaattttagaatctaaataggacgcgcgggaaactcataggatggaaaaaataatggc 447  Q
    |||||||||  |||||  |||||| |||||| | ||||||||||||||||||||| || | |||| ||||||| |||||||| |||||||    
T  7925426 ataaaaccttaaaaaatacgttgaaatatttcagattttagaatctaaataggacacgtgagaaattcatagggtggaaaaagtaatggc 7925337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 356 - 445
Target Start/End: Original strand, 33513403 - 33513492
Alignment:
Q  356 ccataaaacctccaaaaactcgttgagatatttaaaattttagaatctaaataggacgcgcgggaaactcataggatggaaaaaataatg 445  Q
    ||||||||||||| ||||| |||||| |||||||  |||||||||||  ||||||  || |  |||||||||||| ||||||||||||||    
T  33513403 ccataaaacctccgaaaacacgttgaaatatttaggattttagaatccgaatagggtgcacaagaaactcatagggtggaaaaaataatg 33513492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 392 - 443
Target Start/End: Original strand, 26665538 - 26665589
Alignment:
Q  392 attttagaatctaaataggacgcgcgggaaactcataggatggaaaaaataa 443  Q
    |||||| |||| |||||||||||||| |||||||||||||||| ||||||||    
T  26665538 attttaaaatccaaataggacgcgcgagaaactcataggatgggaaaaataa 26665589  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 358 - 439
Target Start/End: Complemental strand, 25123305 - 25123224
Alignment:
Q  358 ataaaacctccaaaaactcgttgagatatttaaaattttagaatctaaataggacgcgcgggaaactcataggatggaaaaa 439  Q
    ||||||||||||||||| |||| | ||||||   |||||||||||| |||||| ||||||  ||||||||| | ||||||||    
T  25123305 ataaaacctccaaaaacgcgttaaaatattttggattttagaatctgaatagggcgcgcgaaaaactcatatggtggaaaaa 25123224  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000008; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 368 - 447
Target Start/End: Original strand, 13271486 - 13271565
Alignment:
Q  368 caaaaactcgttgagatatttaaaattttagaatctaaataggacgcgcgggaaactcataggatggaaaaaataatggc 447  Q
    ||||||| |||||| |||||| | ||||||||||  |||||||||||||| |||||| ||| | |||||||| |||||||    
T  13271486 caaaaacacgttgaaatatttcagattttagaattcaaataggacgcgcgagaaactaatatggtggaaaaagtaatggc 13271565  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 369 - 447
Target Start/End: Original strand, 27549736 - 27549814
Alignment:
Q  369 aaaaactcgttgagatatttaaaattttagaatctaaataggacgcgcgggaaactcataggatggaaaaaataatggc 447  Q
    |||||| |||||| | |||| ||||||||||||||||||| || | ||| |||||||||| || ||||||| |||||||    
T  27549736 aaaaacacgttgaaacatttcaaattttagaatctaaatatgatgtgcgagaaactcatatgacggaaaaagtaatggc 27549814  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 359 - 455
Target Start/End: Complemental strand, 35323685 - 35323589
Alignment:
Q  359 taaaacctccaaaaactcgttgagatatttaaaattttagaatctaaataggacgcgcgggaaactcataggatggaaaaaataatggcttcaaatt 455  Q
    |||||||| ||||||  |||||| ||||||   |||||||||||| |||||||||| || ||| |||||| | ||| |||| ||||||| |||||||    
T  35323685 taaaaccttcaaaaatacgttgaaatatttcggattttagaatctgaataggacgcacgagaatctcataaggtgggaaaagtaatggcctcaaatt 35323589  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 360 - 427
Target Start/End: Complemental strand, 17223148 - 17223081
Alignment:
Q  360 aaaacctccaaaaactcgttgagatatttaaaattttagaatctaaataggacgcgcgggaaactcat 427  Q
    ||||||| ||||||| |||||| |||||| | ||||||||||||||||| | |||| | |||||||||    
T  17223148 aaaacctgcaaaaacacgttgaaatatttcagattttagaatctaaataaggcgcgtgagaaactcat 17223081  T

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