View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4605-Insertion-8 (Length: 580)

Name: NF4605-Insertion-8
Description: NF4605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4605-Insertion-8
NF4605-Insertion-8
[»] chr8 (1 HSPs)
chr8 (8-580)||(10401116-10401688)
[»] chr6 (23 HSPs)
chr6 (262-580)||(20233303-20233622)
chr6 (262-580)||(22127287-22127606)
chr6 (314-429)||(18995485-18995600)
chr6 (312-429)||(22207063-22207180)
chr6 (10-146)||(20233734-20233870)
chr6 (10-146)||(22127718-22127854)
chr6 (293-417)||(21967976-21968100)
chr6 (293-417)||(22085859-22085983)
chr6 (314-429)||(20235821-20235936)
chr6 (314-429)||(22129805-22129920)
chr6 (293-417)||(22001800-22001924)
chr6 (314-429)||(18979421-18979536)
chr6 (314-429)||(20083717-20083832)
chr6 (314-415)||(18990773-18990874)
chr6 (16-137)||(20235407-20235528)
chr6 (16-137)||(22129391-22129512)
chr6 (18-137)||(18995084-18995203)
chr6 (18-137)||(22001501-22001620)
chr6 (18-137)||(22085560-22085679)
chr6 (314-399)||(24387200-24387285)
chr6 (18-137)||(21967231-21967350)
chr6 (18-137)||(21967677-21967796)
chr6 (16-104)||(20083436-20083524)
[»] scaffold0007 (2 HSPs)
scaffold0007 (314-429)||(7393-7508)
scaffold0007 (18-137)||(7790-7909)
[»] scaffold0074 (2 HSPs)
scaffold0074 (314-429)||(49859-49974)
scaffold0074 (18-137)||(50256-50375)
[»] chr1 (6 HSPs)
chr1 (314-417)||(47627666-47627769)
chr1 (314-423)||(47574877-47574986)
chr1 (320-405)||(47593652-47593737)
chr1 (318-417)||(47584568-47584667)
chr1 (341-417)||(47619494-47619570)
chr1 (350-402)||(47700942-47700994)
[»] scaffold0264 (1 HSPs)
scaffold0264 (18-137)||(14919-15038)
[»] chr5 (1 HSPs)
chr5 (347-417)||(469773-469843)
[»] chr2 (2 HSPs)
chr2 (347-414)||(2672718-2672785)
chr2 (347-407)||(31229614-31229674)
[»] chr7 (2 HSPs)
chr7 (347-417)||(19939307-19939377)
chr7 (347-417)||(19970446-19970516)


Alignment Details
Target: chr8 (Bit Score: 526; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 526; E-Value: 0
Query Start/End: Original strand, 8 - 580
Target Start/End: Original strand, 10401116 - 10401688
Alignment:
Q  8 cagggaactgttgaacacataataaaccaatctgaacgcatttgatgacctcatattcagaataagttcctttaatatttttgtccaatatacttaatgt 107  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  10401116 cagggaactgttgaacacataataaaccaatctgaatgcatttgatgacctcatattcagaataagttcctttaatattttggtccaatatacttaatgt 10401215  T
Q  108 tatttgatcactccattgtctccaaacctgtgacaattggatgtatgaatatacaatttgttaccacattgcatttgaatcaatctaagtaaacattgga 207  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10401216 tatttgatcactccattgtctccaaacctgtgacaattggatgaatgaatatacaatttgttaccacattgcatttgaatcaatctaagtaaacattgga 10401315  T
Q  208 tgtatatttcttatctacattaatggaagaaataaacattggatatatacacacacttacattacttaggaggctatcaccaacatgtgattcataagac 307  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10401316 tgtatatttcttatctacattaatggaagaaataaacattgtatatatacacacacttacattacttaggaggctatcaccaacatgtgattcataagac 10401415  T
Q  308 cttatgttcttctttccagtaataatttccaaaatcatgactccaaaactataaacatcagatttctccgaaaattgtccaagcattgcatattctggag 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10401416 cttatgttcttctttccagtaataatttccaaaatcatgactccaaaactataaacatcagatttctccgaaaattgtccaagcattgcatattctggag 10401515  T
Q  408 atatataacctctacaaaataattttnnnnnnnnngtcaacacgagactatcttttatgaaaggaaaacatgggatattgatgataatttaacacttaca 507  Q
    ||||||||||||||||||||||||||         ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  10401516 atatataacctctacaaaataatttttaaaaaaaagtcaacacgagactatcttttatgaaaggaaaagatgggatattgatgataatttaacacttaca 10401615  T
Q  508 atgttccgacgatcctatttgtgtttcctttgtcttggtttaattcaacaattctagcaagaccaaaatctga 580  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10401616 atgttccgacgatcctatttgtgtttcctttgtcttggtttaattcaacaattctagcaagaccaaaatctga 10401688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 145; Significance: 5e-76; HSPs: 23)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 145; E-Value: 5e-76
Query Start/End: Original strand, 262 - 580
Target Start/End: Complemental strand, 20233622 - 20233303
Alignment:
Q  262 acttacattacttaggaggctatcaccaacatgtgattcataagaccttatgttcttctttccagtaataatttccaaaatcatgactccaaaactataa 361  Q
    |||||||| ||| ||||||| ||||||||||||||||||||||||||| || ||||||||||| ||||||||||| |||| |||||||||||||||||||    
T  20233622 acttacataactcaggaggccatcaccaacatgtgattcataagacctaatattcttctttccggtaataatttctaaaaccatgactccaaaactataa 20233523  T
Q  362 acatcagatttctccgaaaattgtccaagcattgcatattctggagatatataacctctacaa-aataattttnnnnnnnnngtcaacacgagactatct 460  Q
    |||||||||||||| |||||||| || ||||| |||||||||||||| |||||||||||| || ||||   ||          ||||||||||  ||  |    
T  20233522 acatcagatttctcagaaaattgcccgagcatcgcatattctggagacatataacctctaaaacaatacaattttgaaacaaatcaacacgagcttagat 20233423  T
Q  461 tttatgaaaggaaaacatgggatattgatgataatttaacacttacaatgttccgacgatcctatttgtgtttcctttgtcttggtttaattcaacaatt 560  Q
    |||| ||||||||  ||  ||| |||||||||||||||| |||||||||||||| ||||||||||||||  |||||||||| ||||||| ||| ||||||    
T  20233422 tttaagaaaggaatccagcggaaattgatgataatttaaaacttacaatgttcccacgatcctatttgtacttcctttgtcctggtttagttctacaatt 20233323  T
Q  561 ctagcaagaccaaaatctga 580  Q
    ||||||||||||||||||||    
T  20233322 ctagcaagaccaaaatctga 20233303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 145; E-Value: 5e-76
Query Start/End: Original strand, 262 - 580
Target Start/End: Complemental strand, 22127606 - 22127287
Alignment:
Q  262 acttacattacttaggaggctatcaccaacatgtgattcataagaccttatgttcttctttccagtaataatttccaaaatcatgactccaaaactataa 361  Q
    |||||||| ||| ||||||| ||||||||||||||||||||||||||| || ||||||||||| ||||||||||| |||| |||||||||||||||||||    
T  22127606 acttacataactcaggaggccatcaccaacatgtgattcataagacctaatattcttctttccggtaataatttctaaaaccatgactccaaaactataa 22127507  T
Q  362 acatcagatttctccgaaaattgtccaagcattgcatattctggagatatataacctctacaa-aataattttnnnnnnnnngtcaacacgagactatct 460  Q
    |||||||||||||| |||||||| || ||||| |||||||||||||| |||||||||||| || ||||   ||          ||||||||||  ||  |    
T  22127506 acatcagatttctcagaaaattgcccgagcatcgcatattctggagacatataacctctaaaacaatacaattttgaaacaaatcaacacgagcttagat 22127407  T
Q  461 tttatgaaaggaaaacatgggatattgatgataatttaacacttacaatgttccgacgatcctatttgtgtttcctttgtcttggtttaattcaacaatt 560  Q
    |||| ||||||||  ||  ||| |||||||||||||||| |||||||||||||| ||||||||||||||  |||||||||| ||||||| ||| ||||||    
T  22127406 tttaagaaaggaatccagcggaaattgatgataatttaaaacttacaatgttcccacgatcctatttgtacttcctttgtcctggtttagttctacaatt 22127307  T
Q  561 ctagcaagaccaaaatctga 580  Q
    ||||||||||||||||||||    
T  22127306 ctagcaagaccaaaatctga 22127287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 314 - 429
Target Start/End: Original strand, 18995485 - 18995600
Alignment:
Q  314 ttcttctttccagtaataatttccaaaatcatgactccaaaactataaacatcagatttctccgaaaattgtccaagcattgcatattctggagatatat 413  Q
    ||||||||||||| |||||| || |||| ||| ||||||||||||||||  || ||||| || |||||||||||||||||||||||||| ||||| ||||    
T  18995485 ttcttctttccagcaataatctctaaaagcataactccaaaactataaatgtcggatttttcagaaaattgtccaagcattgcatattccggagacatat 18995584  T
Q  414 aacctctacaaaataa 429  Q
    |||| |||||||||||    
T  18995585 aaccactacaaaataa 18995600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 312 - 429
Target Start/End: Complemental strand, 22207180 - 22207063
Alignment:
Q  312 tgttcttctttccagtaataatttccaaaatcatgactccaaaactataaacatcagatttctccgaaaattgtccaagcattgcatattctggagatat 411  Q
    ||||||||||||||  |||||| || |||| ||| ||||||||||||||||  || ||||| || |||||||||||||||||||||||||||||||| ||    
T  22207180 tgttcttctttccaacaataatctctaaaagcataactccaaaactataaatgtcggatttttcagaaaattgtccaagcattgcatattctggagacat 22207081  T
Q  412 ataacctctacaaaataa 429  Q
    |||||| || ||||||||    
T  22207080 ataaccactgcaaaataa 22207063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 10 - 146
Target Start/End: Complemental strand, 20233870 - 20233734
Alignment:
Q  10 gggaactgttgaacacataataaaccaatctgaacgcatttgatgacctcatattcagaataagttcctttaatatttttgtccaatatacttaatgtta 109  Q
    |||||||| ||||| ||||||||||||||||||| |||||| || || |||  |||||||||  ||||||||||||||  ||| ||||| ||||||| ||    
T  20233870 gggaactgctgaacgcataataaaccaatctgaatgcatttaattacttcaatttcagaatatcttcctttaatatttgggtctaatatgcttaatggta 20233771  T
Q  110 tttgatcactccattgtctccaaacctgtgacaattg 146  Q
    ||| ||| ||||||||| ||||||||||| |||||||    
T  20233770 tttcatccctccattgtttccaaacctgttacaattg 20233734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 10 - 146
Target Start/End: Complemental strand, 22127854 - 22127718
Alignment:
Q  10 gggaactgttgaacacataataaaccaatctgaacgcatttgatgacctcatattcagaataagttcctttaatatttttgtccaatatacttaatgtta 109  Q
    |||||||| ||||| ||||||||||||||||||| |||||| || || |||  |||||||||  ||||||||||||||  ||| ||||| ||||||| ||    
T  22127854 gggaactgctgaacgcataataaaccaatctgaatgcatttaattacttcaatttcagaatatcttcctttaatatttgggtctaatatgcttaatggta 22127755  T
Q  110 tttgatcactccattgtctccaaacctgtgacaattg 146  Q
    ||| ||| ||||||||| ||||||||||| |||||||    
T  22127754 tttcatccctccattgtttccaaacctgttacaattg 22127718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 293 - 417
Target Start/End: Original strand, 21967976 - 21968100
Alignment:
Q  293 tgtgattcataagaccttatgttcttctttccagtaataatttccaaaatcatgactccaaaactataaacatcagatttctccgaaaattgtccaagca 392  Q
    |||| |||||| || ||||| |||||||||||||  | ||| || |  |||||||||||||||||||||||||| ||||| || |||||||||| || ||    
T  21967976 tgtggttcatatgaacttatattcttctttccagctacaatctctaggatcatgactccaaaactataaacatctgatttttcagaaaattgtcaaaaca 21968075  T
Q  393 ttgcatattctggagatatataacc 417  Q
    |||||||||||||||| ||||||||    
T  21968076 ttgcatattctggagacatataacc 21968100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 293 - 417
Target Start/End: Original strand, 22085859 - 22085983
Alignment:
Q  293 tgtgattcataagaccttatgttcttctttccagtaataatttccaaaatcatgactccaaaactataaacatcagatttctccgaaaattgtccaagca 392  Q
    |||| |||||| || ||||| |||||||||||||  | ||| || |  |||||||||||||||||||||||||| ||||| || ||||||||||||| ||    
T  22085859 tgtggttcatatgaacttatattcttctttccagctacaatctctaggatcatgactccaaaactataaacatctgatttttcagaaaattgtccaaaca 22085958  T
Q  393 ttgcatattctggagatatataacc 417  Q
    ||||||||||||| || ||||||||    
T  22085959 ttgcatattctggcgacatataacc 22085983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 314 - 429
Target Start/End: Original strand, 20235821 - 20235936
Alignment:
Q  314 ttcttctttccagtaataatttccaaaatcatgactccaaaactataaacatcagatttctccgaaaattgtccaagcattgcatattctggagatatat 413  Q
    ||||||||||||| |||||| || |||| ||| ||||||||||||||||  || ||||| || ||||||||||| | |||||||||||| ||||| ||||    
T  20235821 ttcttctttccagcaataatctctaaaagcataactccaaaactataaatgtcggatttttcagaaaattgtccgaccattgcatattccggagacatat 20235920  T
Q  414 aacctctacaaaataa 429  Q
    |||| |||||||||||    
T  20235921 aaccactacaaaataa 20235936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 314 - 429
Target Start/End: Original strand, 22129805 - 22129920
Alignment:
Q  314 ttcttctttccagtaataatttccaaaatcatgactccaaaactataaacatcagatttctccgaaaattgtccaagcattgcatattctggagatatat 413  Q
    ||||||||||||| |||||| || |||| ||| ||||||||||||||||  || ||||| || ||||||||||| | |||||||||||| ||||| ||||    
T  22129805 ttcttctttccagcaataatctctaaaagcataactccaaaactataaatgtcggatttttcagaaaattgtccgaccattgcatattccggagacatat 22129904  T
Q  414 aacctctacaaaataa 429  Q
    |||| |||||||||||    
T  22129905 aaccactacaaaataa 22129920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 293 - 417
Target Start/End: Original strand, 22001800 - 22001924
Alignment:
Q  293 tgtgattcataagaccttatgttcttctttccagtaataatttccaaaatcatgactccaaaactataaacatcagatttctccgaaaattgtccaagca 392  Q
    ||||||||||| || ||||  |||||||||||||  | ||| || |  |||||||||||||||||||||| ||| ||||| || |||||||||| || ||    
T  22001800 tgtgattcatatgaacttacattcttctttccagctacaatctctatgatcatgactccaaaactataaatatctgatttttcagaaaattgtctaaaca 22001899  T
Q  393 ttgcatattctggagatatataacc 417  Q
    |||||||||||||||| ||||||||    
T  22001900 ttgcatattctggagacatataacc 22001924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 314 - 429
Target Start/End: Original strand, 18979421 - 18979536
Alignment:
Q  314 ttcttctttccagtaataatttccaaaatcatgactccaaaactataaacatcagatttctccgaaaattgtccaagcattgcatattctggagatatat 413  Q
    ||||||||||||| |||||| || | || ||| |||||||||||||| |  || ||||| || ||||||||||||| |||| ||||||| ||||| ||||    
T  18979421 ttcttctttccagcaataatctctacaagcataactccaaaactatatatgtcggatttttcagaaaattgtccaaacattacatattccggagacatat 18979520  T
Q  414 aacctctacaaaataa 429  Q
    |||| ||||| |||||    
T  18979521 aaccactacataataa 18979536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 314 - 429
Target Start/End: Original strand, 20083717 - 20083832
Alignment:
Q  314 ttcttctttccagtaataatttccaaaatcatgactccaaaactataaacatcagatttctccgaaaattgtccaagcattgcatattctggagatatat 413  Q
    ||||||||||||| |||||| || | || ||| ||||||||||||||||  || ||||| || ||||||||||| | |||| ||||||| ||||| ||||    
T  20083717 ttcttctttccagcaataatctctataagcataactccaaaactataaatgtcggatttttcagaaaattgtccgaacattacatattccggagacatat 20083816  T
Q  414 aacctctacaaaataa 429  Q
    |||| ||||| |||||    
T  20083817 aaccactacataataa 20083832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 314 - 415
Target Start/End: Original strand, 18990773 - 18990874
Alignment:
Q  314 ttcttctttccagtaataatttccaaaatcatgactccaaaactataaacatcagatttctccgaaaattgtccaagcattgcatattctggagatatat 413  Q
    ||||||||| ||| |||||| || |||| ||| ||||||||||||||||  || || || || ||||||||||||| |||| ||||||| ||||| ||||    
T  18990773 ttcttcttttcagcaataatctctaaaagcataactccaaaactataaatgtcggaattttcagaaaattgtccaaacattacatattccggagacatat 18990872  T
Q  414 aa 415  Q
    ||    
T  18990873 aa 18990874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 16 - 137
Target Start/End: Original strand, 20235407 - 20235528
Alignment:
Q  16 tgttgaacacataataaaccaatctgaacgcatttgatgacctcatattcagaataagttcctttaatatttttgtccaatatacttaatgttatttgat 115  Q
    |||||||||||||||| ||||||||||| ||| || ||||| |||| |  |||||||  | ||| |||||||  |||||| |||||||| | | ||||||    
T  20235407 tgttgaacacataatagaccaatctgaatgcacttaatgacttcatttgtagaataatcttcttgaatatttgggtccaaaatacttaaaggtgtttgat 20235506  T
Q  116 cactccattgtctccaaacctg 137  Q
    |  ||||||||||||| |||||    
T  20235507 ccatccattgtctccatacctg 20235528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 16 - 137
Target Start/End: Original strand, 22129391 - 22129512
Alignment:
Q  16 tgttgaacacataataaaccaatctgaacgcatttgatgacctcatattcagaataagttcctttaatatttttgtccaatatacttaatgttatttgat 115  Q
    |||||||||||||||| ||||||||||| ||| || ||||| |||| |  |||||||  | ||| |||||||  |||||| |||||||| | | ||||||    
T  22129391 tgttgaacacataatagaccaatctgaatgcacttaatgacttcatttgtagaataatcttcttgaatatttgggtccaaaatacttaaaggtgtttgat 22129490  T
Q  116 cactccattgtctccaaacctg 137  Q
    |  ||||||||||||| |||||    
T  22129491 ccatccattgtctccatacctg 22129512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 18 - 137
Target Start/End: Original strand, 18995084 - 18995203
Alignment:
Q  18 ttgaacacataataaaccaatctgaacgcatttgatgacctcatattcagaataagttcctttaatatttttgtccaatatacttaatgttatttgatca 117  Q
    |||||||||||| | ||||||||||| |||||| ||||| |||| | ||||||||  | |||||||||||  |||||| |||||||  | | |||||||     
T  18995084 ttgaacacataacagaccaatctgaatgcatttaatgacttcatttgcagaataatcttctttaatatttaggtccaaaatacttataggtgtttgatcc 18995183  T
Q  118 ctccattgtctccaaacctg 137  Q
     |||| |||||||| |||||    
T  18995184 atccactgtctccatacctg 18995203  T

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Target: chr6; HSP #18
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 18 - 137
Target Start/End: Original strand, 22001501 - 22001620
Alignment:
Q  18 ttgaacacataataaaccaatctgaacgcatttgatgacctcatattcagaataagttcctttaatatttttgtccaatatacttaatgttatttgatca 117  Q
    |||||||||||||| ||||||||||| ||| || ||||| |||  || |||||||  |||||||||||||  |||||||||| |||| | | ||| |||     
T  22001501 ttgaacacataatagaccaatctgaatgcacttaatgacttcagttttagaataatctcctttaatatttgggtccaatatatttaaaggtgttttatcc 22001600  T
Q  118 ctccattgtctccaaacctg 137  Q
     |||| |||||||| |||||    
T  22001601 atccactgtctccatacctg 22001620  T

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Target: chr6; HSP #19
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 18 - 137
Target Start/End: Original strand, 22085560 - 22085679
Alignment:
Q  18 ttgaacacataataaaccaatctgaacgcatttgatgacctcatattcagaataagttcctttaatatttttgtccaatatacttaatgttatttgatca 117  Q
    |||||||||||||| ||||||||||| ||| || ||||| |||  || |||||||  |||||||||||||  |||||||||| |||| | | ||| |||     
T  22085560 ttgaacacataatagaccaatctgaatgcacttaatgacttcagttttagaataatctcctttaatatttgggtccaatatatttaaaggtgttttatcc 22085659  T
Q  118 ctccattgtctccaaacctg 137  Q
     |||| |||||||| |||||    
T  22085660 atccactgtctccatacctg 22085679  T

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Target: chr6; HSP #20
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 314 - 399
Target Start/End: Complemental strand, 24387285 - 24387200
Alignment:
Q  314 ttcttctttccagtaataatttccaaaatcatgactccaaaactataaacatcagatttctccgaaaattgtccaagcattgcata 399  Q
    ||||||||||||| |||||| || |||| ||  ||||||||||||||||  || ||||| || ||||||||||||| |||| ||||    
T  24387285 ttcttctttccagcaataatctcgaaaagcagaactccaaaactataaatgtcggatttttcagaaaattgtccaaacattacata 24387200  T

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Target: chr6; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 137
Target Start/End: Original strand, 21967231 - 21967350
Alignment:
Q  18 ttgaacacataataaaccaatctgaacgcatttgatgacctcatattcagaataagttcctttaatatttttgtccaatatacttaatgttatttgatca 117  Q
    |||||||||||||| ||||||||||| ||| || ||||| |||  || |||| ||  |||||||||||||  |||||||||| |||| | | ||| |||     
T  21967231 ttgaacacataatagaccaatctgaatgcacttaatgacttcagttttagaaaaatctcctttaatatttgggtccaatatatttaaaggtgttttatcc 21967330  T
Q  118 ctccattgtctccaaacctg 137  Q
     |||| |||||||| |||||    
T  21967331 atccactgtctccacacctg 21967350  T

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Target: chr6; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 137
Target Start/End: Original strand, 21967677 - 21967796
Alignment:
Q  18 ttgaacacataataaaccaatctgaacgcatttgatgacctcatattcagaataagttcctttaatatttttgtccaatatacttaatgttatttgatca 117  Q
    |||||||||||||| ||||||||||| ||| || ||||| |||  || |||| ||  |||||||||||||  |||||||||| |||| | | ||| |||     
T  21967677 ttgaacacataatagaccaatctgaatgcacttaatgacttcagttttagaaaaatctcctttaatatttgggtccaatatatttaaaggtgttttatcc 21967776  T
Q  118 ctccattgtctccaaacctg 137  Q
     |||| |||||||| |||||    
T  21967777 atccactgtctccacacctg 21967796  T

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Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 16 - 104
Target Start/End: Original strand, 20083436 - 20083524
Alignment:
Q  16 tgttgaacacataataaaccaatctgaacgcatttgatgacctcatattcagaataagttcctttaatatttttgtccaatatacttaa 104  Q
    |||||||||||||||| ||||||||||| ||| || ||||| |||| |  |||||||  | |||||||||||   |||| |||||||||    
T  20083436 tgttgaacacataatagaccaatctgaatgcacttaatgacttcatttgtagaataatcttctttaatatttggatccagtatacttaa 20083524  T

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Target: scaffold0007 (Bit Score: 68; Significance: 4e-30; HSPs: 2)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 314 - 429
Target Start/End: Complemental strand, 7508 - 7393
Alignment:
Q  314 ttcttctttccagtaataatttccaaaatcatgactccaaaactataaacatcagatttctccgaaaattgtccaagcattgcatattctggagatatat 413  Q
    ||||||||||||| |||||| || |||| ||| ||||||||||||||||  |||||||| || |||||||||||||||||||||||||| ||||| ||||    
T  7508 ttcttctttccagcaataatctctaaaagcataactccaaaactataaatgtcagatttttcagaaaattgtccaagcattgcatattccggagacatat 7409  T
Q  414 aacctctacaaaataa 429  Q
    |||| |||||||||||    
T  7408 aaccactacaaaataa 7393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 18 - 137
Target Start/End: Complemental strand, 7909 - 7790
Alignment:
Q  18 ttgaacacataataaaccaatctgaacgcatttgatgacctcatattcagaataagttcctttaatatttttgtccaatatacttaatgttatttgatca 117  Q
    |||||||||||| | ||||||||||| |||||| ||||| |||| |  |||||||  |  ||||||||||  ||||||||||||||| | | |||||||     
T  7909 ttgaacacataacagaccaatctgaatgcatttaatgacttcatttgtagaataatcttttttaatatttgggtccaatatacttaaaggtgtttgatcc 7810  T
Q  118 ctccattgtctccaaacctg 137  Q
     |||| |||||||| |||||    
T  7809 atccactgtctccatacctg 7790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074 (Bit Score: 64; Significance: 1e-27; HSPs: 2)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 314 - 429
Target Start/End: Complemental strand, 49974 - 49859
Alignment:
Q  314 ttcttctttccagtaataatttccaaaatcatgactccaaaactataaacatcagatttctccgaaaattgtccaagcattgcatattctggagatatat 413  Q
    ||||||||||||| |||||| || |||| ||| ||||||||||||||||  || ||||| || |||||||||||||||||||||||||| ||||| ||||    
T  49974 ttcttctttccagcaataatctctaaaagcataactccaaaactataaatgtcggatttttcagaaaattgtccaagcattgcatattccggagacatat 49875  T
Q  414 aacctctacaaaataa 429  Q
    |||| |||||||||||    
T  49874 aaccactacaaaataa 49859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 137
Target Start/End: Complemental strand, 50375 - 50256
Alignment:
Q  18 ttgaacacataataaaccaatctgaacgcatttgatgacctcatattcagaataagttcctttaatatttttgtccaatatacttaatgttatttgatca 117  Q
    |||||||||||| | ||||||||||| |||||| ||||| |||| |  |||||||  | |||||||||||  |||||| |||||||  | | |||||||     
T  50375 ttgaacacataacagaccaatctgaatgcatttaatgacttcatttgtagaataatcttctttaatatttgggtccaaaatacttataggtgtttgatcc 50276  T
Q  118 ctccattgtctccaaacctg 137  Q
     |||| |||||||| |||||    
T  50275 atccactgtctccatacctg 50256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 4e-18; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 314 - 417
Target Start/End: Complemental strand, 47627769 - 47627666
Alignment:
Q  314 ttcttctttccagtaataatttccaaaatcatgactccaaaactataaacatcagatttctccgaaaattgtccaagcattgcatattctggagatatat 413  Q
    ||||| |||||| ||||||| || | || ||| |||||||||||| |||||||||| ||||| |||||||||||| ||||||||||||| ||||| || |    
T  47627769 ttcttttttccactaataatctcgagaaccatcactccaaaactaaaaacatcagacttctctgaaaattgtccatgcattgcatattccggagacatgt 47627670  T
Q  414 aacc 417  Q
    ||||    
T  47627669 aacc 47627666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 314 - 423
Target Start/End: Complemental strand, 47574986 - 47574877
Alignment:
Q  314 ttcttctttccagtaataatttccaaaatcatgactccaaaactataaacatcagatttctccgaaaattgtccaagcattgcatattctggagatatat 413  Q
    |||||||||||| |||||||||| | || ||||| ||| |||||||| |||||||| ||| | ||||| | |||| |||||||||||| |||||||||||    
T  47574986 ttcttctttccactaataatttctagaaccatgattccgaaactatacacatcagacttcacagaaaaatatccatgcattgcatattatggagatatat 47574887  T
Q  414 aacctctaca 423  Q
    | || |||||    
T  47574886 atccactaca 47574877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 320 - 405
Target Start/End: Complemental strand, 47593737 - 47593652
Alignment:
Q  320 tttccagtaataatttccaaaatcatgactccaaaactataaacatcagatttctccgaaaattgtccaagcattgcatattctgg 405  Q
    |||||||||||||| || ||||  ||||| ||||||||| ||||||| || ||||| ||||| |||||||||||||||||||||||    
T  47593737 tttccagtaataatctctaaaacaatgacaccaaaactaaaaacatccgacttctctgaaaagtgtccaagcattgcatattctgg 47593652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 318 - 417
Target Start/End: Complemental strand, 47584667 - 47584568
Alignment:
Q  318 tctttccagtaataatttccaaaatcatgactccaaaactataaacatcagatttctccgaaaattgtccaagcattgcatattctggagatatataacc 417  Q
    |||||||| ||||||| || | || ||||| |||||||||||| ||||| |||||| | ||||| | |||| |||| |||||||||||||||||||||||    
T  47584667 tctttccactaataatctctagaaccatgattccaaaactatacacatctgatttcacagaaaagtatccatgcatggcatattctggagatatataacc 47584568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 341 - 417
Target Start/End: Complemental strand, 47619570 - 47619494
Alignment:
Q  341 atcatgactccaaaactataaacatcagatttctccgaaaattgtccaagcattgcatattctggagatatataacc 417  Q
    ||||| |||||||||||| |||| || ||||| || || |||| |||||||||||||||||| ||||| ||||||||    
T  47619570 atcattactccaaaactaaaaacgtctgatttttcagagaattttccaagcattgcatattcaggagacatataacc 47619494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 350 - 402
Target Start/End: Original strand, 47700942 - 47700994
Alignment:
Q  350 ccaaaactataaacatcagatttctccgaaaattgtccaagcattgcatattc 402  Q
    ||||||||| ||||||| |||||  | ||||||||||||| ||||||||||||    
T  47700942 ccaaaactaaaaacatccgatttgactgaaaattgtccaaacattgcatattc 47700994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0264 (Bit Score: 44; Significance: 9e-16; HSPs: 1)
Name: scaffold0264
Description:

Target: scaffold0264; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 18 - 137
Target Start/End: Original strand, 14919 - 15038
Alignment:
Q  18 ttgaacacataataaaccaatctgaacgcatttgatgacctcatattcagaataagttcctttaatatttttgtccaatatacttaatgttatttgatca 117  Q
    |||||||||||||| ||||||||||| ||| || ||||| |||| |  |||||||  | |||||||||||  ||||||||||||||| | | |||||||     
T  14919 ttgaacacataatagaccaatctgaatgcacttaatgacttcatttgtagaataatcttctttaatatttgggtccaatatacttaaaggtgtttgatcc 15018  T
Q  118 ctccattgtctccaaacctg 137  Q
     ||||||||||||| |||||    
T  15019 atccattgtctccatacctg 15038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 347 - 417
Target Start/End: Original strand, 469773 - 469843
Alignment:
Q  347 actccaaaactataaacatcagatttctccgaaaattgtccaagcattgcatattctggagatatataacc 417  Q
    |||||||||||  | ||||| |||||||| |||||||||||  ||||||||||||| ||||| ||||||||    
T  469773 actccaaaactgaacacatcggatttctcagaaaattgtccgtgcattgcatattccggagacatataacc 469843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 347 - 414
Target Start/End: Complemental strand, 2672785 - 2672718
Alignment:
Q  347 actccaaaactataaacatcagatttctccgaaaattgtccaagcattgcatattctggagatatata 414  Q
    |||||||||||  |||||||||||||| | ||||| | ||||  |||||||||||||||||| |||||    
T  2672785 actccaaaactgaaaacatcagatttcgcagaaaaatatccacccattgcatattctggagacatata 2672718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 347 - 407
Target Start/End: Original strand, 31229614 - 31229674
Alignment:
Q  347 actccaaaactataaacatcagatttctccgaaaattgtccaagcattgcatattctggag 407  Q
    |||||||||||||||||||| | ||||||||  || | |||  ||||||||||||||||||    
T  31229614 actccaaaactataaacatccgctttctccgtcaaatatccgtgcattgcatattctggag 31229674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 347 - 417
Target Start/End: Complemental strand, 19939377 - 19939307
Alignment:
Q  347 actccaaaactataaacatcagatttctccgaaaattgtccaagcattgcatattctggagatatataacc 417  Q
    |||||||| ||| | ||||||||||| || |||||  ||||  ||||||||||||||||||| ||||||||    
T  19939377 actccaaagctaaagacatcagatttatcagaaaacagtccttgcattgcatattctggagacatataacc 19939307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 347 - 417
Target Start/End: Complemental strand, 19970516 - 19970446
Alignment:
Q  347 actccaaaactataaacatcagatttctccgaaaattgtccaagcattgcatattctggagatatataacc 417  Q
    |||||||| ||| | ||||||||||| || |||||  ||||  ||||||||||||||||||| ||||||||    
T  19970516 actccaaagctaaagacatcagatttatcagaaaacagtccttgcattgcatattctggagacatataacc 19970446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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