View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4605-Insertion-9 (Length: 515)
Name: NF4605-Insertion-9
Description: NF4605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4605-Insertion-9 |
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| [»] chr7 (10 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 469; Significance: 0; HSPs: 10)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 469; E-Value: 0
Query Start/End: Original strand, 7 - 515
Target Start/End: Original strand, 42854999 - 42855507
Alignment:
| Q |
7 |
acattttaacttccagctttgtgatcttaatgcaacggcatcagcagccaattaatgaaatgcagaaaaggaggattaagaatctttcaaaacgcttgga |
106 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
42854999 |
acattttaacttccagctttgtgatcttaatgcaacggcatcagcagccaattaatgaaatgcagaaaaggaggattaagaatctttcaaaacacttgga |
42855098 |
T |
|
| Q |
107 |
ggagggcatgttaaaagcttctctcactatggttttttctggatctcattttcannnnnnnncactattgggagggatttaagtcttccttaattttaat |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |
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| T |
42855099 |
ggagggcatgttaaaagcttctctcactatggttttttctggatctcattttcattttttttcactattgggagggatttaagtcttctttaattttaat |
42855198 |
T |
|
| Q |
207 |
tttcttttcactattgggagggatttaagtcttccttaatttaaattttctaatactcagatttatgtttctagaagtaataaattacaaggtgctttca |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42855199 |
tttcttttcactattgggagggatttaagtcttccttaatttaaattttctaatactcagatttatgtttctagaagtaataaattacaaggtgctttca |
42855298 |
T |
|
| Q |
307 |
aacttcttcctccttaatttcaaagactattattgtgttgaacatgttttcgactcgtattgtagaaggactacatgagcttgcgtacactagagagtca |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42855299 |
aacttcttcctccttaatttcaaagactattattgtgttgaacatgttttcgactcgtattgtagaaggactacatgagcttgcgtacactagagagtca |
42855398 |
T |
|
| Q |
407 |
tttatccattttcctccgacgagcaactatgcttggaatttccaaagcccacaacgatgtaagaaccaaggtgtggtgtaacgcattactcttattttct |
506 |
Q |
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| T |
42855399 |
tttatccattttcctccgacgagcaactatgcttggaagttccaaagcccacaacgatgtaagcaccaaggtgtggtgtaacgcattactcttattttct |
42855498 |
T |
|
| Q |
507 |
gtttctgca |
515 |
Q |
| |
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||||||||| |
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| T |
42855499 |
gtttctgca |
42855507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 7 - 209
Target Start/End: Original strand, 42848454 - 42848657
Alignment:
| Q |
7 |
acattttaacttccagctttgtgatcttaatgcaacggcatcagcagccaattaatgaaatgcagaaaaggaggattaagaatctttcaaaacgcttgga |
106 |
Q |
| |
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|||||||| ||||||||||||||||||||||||||| |||||| ||||||| |||||||||||||| ||||||||||||| ||||||||||||||||||| |
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| T |
42848454 |
acattttaccttccagctttgtgatcttaatgcaactgcatcaacagccaactaatgaaatgcagagaaggaggattaaggatctttcaaaacgcttgga |
42848553 |
T |
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| Q |
107 |
ggagggcatgttaaaagcttctctcactatggttttttctggatctcattttca-nnnnnnnncactattgggagggatttaagtcttccttaattttaa |
205 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||| ||| ||||||||||||||||||| |
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| T |
42848554 |
ggagggcatgttaaaagcttctctcactatggttttttcttgatctcattttcattttcttttcactattgggaggtattcaagtcttccttaattttaa |
42848653 |
T |
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| Q |
206 |
tttt |
209 |
Q |
| |
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|||| |
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| T |
42848654 |
tttt |
42848657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 199 - 515
Target Start/End: Original strand, 42856784 - 42857100
Alignment:
| Q |
199 |
attttaattttcttttcactattgggagggatttaagtcttccttaatttaaattttctaatactca-gatttatgtttctagaagtaataaattacaag |
297 |
Q |
| |
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|||| ||||||||||||||||||| | |||||||| |||||| |||| |||| | |||||||| |||||||| |||| |||| ||||| |||| |
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| T |
42856784 |
atttcaattttcttttcactattgcaatggatttaaactttccttgattttaattattaaatactcaagatttatgattctggaagcaataa----caag |
42856879 |
T |
|
| Q |
298 |
gtgctttcaaac---ttcttcctccttaatttcaaagactattattgtgttgaacatgttttcgactcgtattgtagaaggactacatgagcttgcgtac |
394 |
Q |
| |
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||| ||||||| |||||||||||||| |||||||||| |||||||||||| |||||||||||| || || ||| | |||||||||| |||| ||| |
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| T |
42856880 |
gtgtcttcaaacaagttcttcctccttaaattcaaagactgttattgtgttgacaatgttttcgacttgtcttttaggatgactacatgaacttggatac |
42856979 |
T |
|
| Q |
395 |
actagagagtcatttatccattttcctccgacgagcaactatgcttggaatttccaaagcccacaacgatgtaagaaccaaggtgtggtgtaacgcatta |
494 |
Q |
| |
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||||||||||| |||||| | ||||||||||| ||||||||||| ||||| ||||||||| ||||| |||||| ||||||||||| |||||| ||| | |
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| T |
42856980 |
actagagagtcgtttatctaatttcctccgacaagcaactatgcatggaagttccaaagctcacaaaactgtaagcaccaaggtgtgttgtaacacatca |
42857079 |
T |
|
| Q |
495 |
ctcttattttctgtttctgca |
515 |
Q |
| |
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||||||||||||||||||||| |
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| T |
42857080 |
ctcttattttctgtttctgca |
42857100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 17 - 157
Target Start/End: Original strand, 42860724 - 42860864
Alignment:
| Q |
17 |
ttccagctttgtgatcttaatgcaacggcatcagcagccaattaatgaaatgcagaaaaggaggattaagaatctttcaaaacgcttggaggagggcatg |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| ||||||||| |||||||||||||| |||| |||||| || |
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| T |
42860724 |
ttccagctttgtgatcttaatgcaacggcatcaacagccaattactgaaatgcagaaagggaggattacagatctttcaaaacgcctggacgagggcctg |
42860823 |
T |
|
| Q |
117 |
ttaaaagcttctctcactatggttttttctggatctcattt |
157 |
Q |
| |
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|| |||||| ||||||| | ||||||||||||||||||||| |
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| T |
42860824 |
ttcaaagctgctctcacgaaggttttttctggatctcattt |
42860864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 17 - 157
Target Start/End: Original strand, 42856647 - 42856787
Alignment:
| Q |
17 |
ttccagctttgtgatcttaatgcaacggcatcagcagccaattaatgaaatgcagaaaaggaggattaagaatctttcaaaacgcttggaggagggcatg |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| ||| ||||| |||||||||||||| |||| |||||| || |
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| T |
42856647 |
ttccagctttgtgatcttaatgcaacggcatcaacagccaattactgaaatgcagaaagggaagattacagatctttcaaaacgcctggatgagggcctg |
42856746 |
T |
|
| Q |
117 |
ttaaaagcttctctcactatggttttttctggatctcattt |
157 |
Q |
| |
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|| |||||| ||||||| | ||||||||||||||||||||| |
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| T |
42856747 |
ttcaaagctgctctcacgaaggttttttctggatctcattt |
42856787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 199 - 438
Target Start/End: Original strand, 42860861 - 42861100
Alignment:
| Q |
199 |
attttaattttcttttcactattgggagggatttaagtcttccttaatttaaattttctaatactca-gatttatgtttctagaagtaataaattacaag |
297 |
Q |
| |
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|||| ||||||||||||||||||| | |||||||| |||||| |||| |||| | |||||||| |||||||| |||| |||||||||| |||| |
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| T |
42860861 |
atttcaattttcttttcactattgcaatggatttaaactttccttgattttaattattaaatactcaagatttatgattctggaagtaataa----caag |
42860956 |
T |
|
| Q |
298 |
gtgctttcaaac---ttcttcctccttaatttcaaagactattattgtgttgaacatgttttcgactcgtattgtagaaggactacatgagcttgcgtac |
394 |
Q |
| |
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||| ||||||| |||||||||||||| |||||||||| |||||||||||| |||||||||||| || || ||| | |||||||||| |||| ||| |
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| T |
42860957 |
gtgtcttcaaacatgttcttcctccttaaattcaaagactgttattgtgttgacaatgttttcgacttgtcttttaggatgactacatgaacttggatac |
42861056 |
T |
|
| Q |
395 |
actagagagtcatttatccattttcctccgacgagcaactatgc |
438 |
Q |
| |
|
||||||||||| |||||| | ||||||||||| ||||||||||| |
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| T |
42861057 |
actagagagtcgtttatctaatttcctccgacaagcaactatgc |
42861100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 7 - 203
Target Start/End: Original strand, 42853108 - 42853305
Alignment:
| Q |
7 |
acattttaacttccagctttgtgatcttaatgcaacggcat-cagcagccaattaatgaaatgcagaaaaggaggattaagaatctttcaaaacgcttgg |
105 |
Q |
| |
|
|||||||| ||||||||| || ||| ||| ||||||||||| || | ||| ||| ||||||||||||||||||||| ||| ||||||||||| || ||| |
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| T |
42853108 |
acattttaccttccagctatgagatgttattgcaacggcatgcaata-ccagttagtgaaatgcagaaaaggaggatcaaggatctttcaaaatgcctgg |
42853206 |
T |
|
| Q |
106 |
aggagggcatgttaaaagcttctctcactatggttttttctggatctcattttca-nnnnnnnncactattgggagggatttaagtcttccttaatttt |
203 |
Q |
| |
|
|||||||| ||||||||| ||||||| ||| ||||||||||||||| ||| || | |||||||||||||||||||| |||||||||||||| |
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| T |
42853207 |
aggagggcctgttaaaagattctctctctaaggttttttctggatcccatgttaattttcttttcactattgggagggatttaaatcttccttaatttt |
42853305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 202 - 248
Target Start/End: Original strand, 42853258 - 42853304
Alignment:
| Q |
202 |
ttaattttcttttcactattgggagggatttaagtcttccttaattt |
248 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
42853258 |
ttaattttcttttcactattgggagggatttaaatcttccttaattt |
42853304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 199 - 255
Target Start/End: Original strand, 42848601 - 42848657
Alignment:
| Q |
199 |
attttaattttcttttcactattgggagggatttaagtcttccttaatttaaatttt |
255 |
Q |
| |
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||||| ||||||||||||||||||||||| ||| |||||||||||||||| |||||| |
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| T |
42848601 |
attttcattttcttttcactattgggaggtattcaagtcttccttaattttaatttt |
42848657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 341 - 437
Target Start/End: Original strand, 42853362 - 42853458
Alignment:
| Q |
341 |
gtgttgaacatgttttcgactcgtattgtagaaggactacatgagcttgcgtacactagagagtcatttatccattttcctccgacgagcaactatg |
437 |
Q |
| |
|
||||||| ||||||| ||||||| || ||| |||||||||||| |||| ||||||| |||||| |||| | | ||||||||||| |||| ||||| |
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| T |
42853362 |
gtgttgacaatgttttggactcgtcttttaggaggactacatgaacttggatacactacagagtcgtttaactaatttcctccgacaagcagctatg |
42853458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 59; Significance: 9e-25; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 41 - 155
Target Start/End: Original strand, 27269 - 27383
Alignment:
| Q |
41 |
acggcatcagcagccaattaatgaaatgcagaaaaggaggattaagaatctttcaaaacgcttggaggagggcatgttaaaagcttctctcactatggtt |
140 |
Q |
| |
|
|||||||||||||||||||| |||||| || ||||||||||||||| ||||| |||||||| |||||||||||||||||||| | ||| ||| |||| |
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| T |
27269 |
acggcatcagcagccaattagtgaaattcaaaaaaggaggattaaggatcttgcaaaacgcctggaggagggcatgttaaaaaatgctccttctaaggtt |
27368 |
T |
|
| Q |
141 |
ttttctggatctcat |
155 |
Q |
| |
|
|||||||||| |||| |
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|
| T |
27369 |
ttttctggatatcat |
27383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 312 - 437
Target Start/End: Original strand, 27482 - 27605
Alignment:
| Q |
312 |
cttcctccttaatttcaaagactattattgtgttgaacatgttttcgactcgtattgtagaaggactacatgagcttgcgtacactagagagtcatttat |
411 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| |||||||||||| || || ||| |||| ||||||| |||| ||||||||| || ||||| |
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| T |
27482 |
cttcctccttaatttcaaagact--tattgtgttgacaatgttttcgacttgtcttttaggaggagtacatgaacttggaaacactagaggctcgtttat |
27579 |
T |
|
| Q |
412 |
ccattttcctccgacgagcaactatg |
437 |
Q |
| |
|
| |||||||||||| |||||||||| |
|
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| T |
27580 |
ctcttttcctccgacaagcaactatg |
27605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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