View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4605_high_1 (Length: 471)
Name: NF4605_high_1
Description: NF4605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4605_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 286; Significance: 1e-160; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 19 - 404
Target Start/End: Complemental strand, 14916179 - 14915789
Alignment:
| Q |
19 |
atggtaaacttttttataataattaacatcattgcaactttttagtacaatgaannnnnnnn------gtaatgatcttgaattcatggcctttttaaag |
112 |
Q |
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| T |
14916179 |
atggtaaacttttttataataattaacatcattgcaactttttagtacaatgatttttttttttttttgtaatgatcttgaattcatggcctttttaaag |
14916080 |
T |
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| Q |
113 |
taccacatgatcctctcagtatcacattggtgtcccaatactagctagtacatattcatagtaaacttaatttcaagaataatctttacttcatcaaaag |
212 |
Q |
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| T |
14916079 |
taccacatgatcctcac--tatcacattggtgtcccaatactagctagtacatattcatagtaaacttaatttcaagaataatctttacttcatcaaaag |
14915982 |
T |
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| Q |
213 |
ttcttaatgtataaaattccacaaacatatatatgannnnnnncacaacataaaacttataactaatgataatcaagttattcacatataaaaccgtaat |
312 |
Q |
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| T |
14915981 |
ttcttaatgtataaaattccacaaacatatatatgatttttttcacaacataaaacttataactaatgataatcaagttattcacatataaaaccgtaat |
14915882 |
T |
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| Q |
313 |
aatagtgctacataaatatatgtacatatcagcttcaatgatttcaaaatcatgtgagatactagatatcc-aaatttttataagggcttcat |
404 |
Q |
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| T |
14915881 |
aatagtgctacataaatatatgtacatatcatcttcaatgatttcaaaatcatgtgagatactagatatccaaaaaatttataagggcttcat |
14915789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 420 - 453
Target Start/End: Complemental strand, 14915778 - 14915745
Alignment:
| Q |
420 |
tattctcatcaaactaatccaaataaaattgttc |
453 |
Q |
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| T |
14915778 |
tattctcatcaaactaatccaaataaaattgttc |
14915745 |
T |
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