View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4605_high_4 (Length: 223)
Name: NF4605_high_4
Description: NF4605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4605_high_4 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 173; Significance: 3e-93; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 18 - 206
Target Start/End: Original strand, 35251292 - 35251480
Alignment:
| Q |
18 |
ccaacaggatcttcctctgtttcttcattttctgatctaaccaatcaaacggcaataaaatcatccacgtgtcatctatcacctgattcatgtttcctta |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
35251292 |
ccaacaggatcttcctctgtttcttcattttctgatctaaccaatcaaacgggaataaaaccatccacgtgtcatctatcacctgattcatgtctcctta |
35251391 |
T |
|
| Q |
118 |
accatcgaaaacaaacgaatcctcttccattttcatgatccaagacacgttaaaatcttaaactaatcagaagctccggttcgagatga |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
35251392 |
accatcgaaaacaaacgaatcctcttccattttcatgatccaagacacgttaaaatcttaaactaatcagaagctccggttcgaaatga |
35251480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University