View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4605_low_3 (Length: 416)
Name: NF4605_low_3
Description: NF4605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4605_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 340; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 21 - 404
Target Start/End: Original strand, 40871995 - 40872378
Alignment:
| Q |
21 |
cacaccatgacataaattgcgcttgaagtcaatcccttggcggcagagcatgtcaattgagtcttgattgtaaaggtcatgctcaaaatcaaaatcgcaa |
120 |
Q |
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|||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40871995 |
cacaccatgagagaaattgcgcttgaagtcaatcccttggcggcagagcatgtcaattgagtcttgattgtaaaggtcatgctcaaaatcaaaatcgcaa |
40872094 |
T |
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| Q |
121 |
aagttgaactcccaaatgtaagagttatttgtaccaaaatgaggaaggttgccattaccatcagatagggtgatgccaacttggatgagtttaagagcat |
220 |
Q |
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| T |
40872095 |
aagttgaactcccatatgtagcggttatttgtaccaaaatgaggaaggttgccgttaccattagatagggtgataccaacttggatgagtttaagagcat |
40872194 |
T |
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| Q |
221 |
caacgttgaccttcaagtaacgatagtggtcagagggtttaagattacagcggtcaactttgggtgaataaattacgccgggaaattcggtatccatgga |
320 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40872195 |
caacattgaccttcaagtaacgatagtggtcagagggtttaagattacagcggtcaactttgggtgaataaattacgccgggaaattcggtatccatgga |
40872294 |
T |
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| Q |
321 |
gatgaaaggatattgattgacaacttgacggatgagatcaaattcaacctctaaattggatgcccaaacttgacgtatgatgat |
404 |
Q |
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| T |
40872295 |
gatgaaaggatattgattgacaacttgacggatgagatcaaattcaacctctaaattggatgcccaaacttgacggatgatgat |
40872378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 22 - 404
Target Start/End: Original strand, 40875094 - 40875476
Alignment:
| Q |
22 |
acaccatgacataaattgcgcttgaagtcaatcccttggcggcagagcatgtcaattgagtcttgattgtaaaggtcatgctcaaaatcaaaatcgcaaa |
121 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| |||| || |||||||| |||| |
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| T |
40875094 |
acaccatgacataaattgcgcttgaagtcaatcccttggcggcagagcatgtcaattgaatcttggttgtaaaggtcacgctcgaagtcaaaatcacaaa |
40875193 |
T |
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| Q |
122 |
agttgaactcccaaatgtaagagttatttgtaccaaaatgaggaaggttgccattaccatcagatagggtgatgccaacttggatgagtttaagagcatc |
221 |
Q |
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|||| || ||||| ||||||||||||||||||||||||||||||||||| || ||||||||||| |||||||| |||||||||||||||||||||||||| |
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| T |
40875194 |
agttaaattcccatatgtaagagttatttgtaccaaaatgaggaaggttaccgttaccatcagaaagggtgataccaacttggatgagtttaagagcatc |
40875293 |
T |
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| Q |
222 |
aacgttgaccttcaagtaacgatagtggtcagagggtttaagattacagcggtcaactttgggtgaataaattacgccgggaaattcggtatccatggag |
321 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| | ||| ||||| |||||||||||||| || || |||||||| || |||||||| |
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| T |
40875294 |
aacgttgaccttcaagtaacgatagtggtcagagggtttaagaaggcggcgatcaacgttgggtgaataaatcacaccaggaaattcagtgtccatggat |
40875393 |
T |
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| Q |
322 |
atgaaaggatattgattgacaacttgacggatgagatcaaattcaacctctaaattggatgcccaaacttgacgtatgatgat |
404 |
Q |
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|||||||||||||| |||| |||||||||||||||| |||| |||||||||||||||||||||||||||||||| |||||||| |
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| T |
40875394 |
atgaaaggatattggttgataacttgacggatgagagcaaactcaacctctaaattggatgcccaaacttgacggatgatgat |
40875476 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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