View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4606-Insertion-1 (Length: 1199)
Name: NF4606-Insertion-1
Description: NF4606
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4606-Insertion-1 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 633; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 633; E-Value: 0
Query Start/End: Original strand, 8 - 827
Target Start/End: Complemental strand, 15506170 - 15505350
Alignment:
| Q |
8 |
aaataacaaagtcacagtgttcagctacgacgcatacaaaattacaattactaataaattcataacattcataggttgtcacataaattgtcaaaatttt |
107 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
15506170 |
aaataacaaagtcacagtgttcagctacgacgcatacaaaattacaattactaataaattcataacattcatagattgtcacataaattgtcaaaatttt |
15506071 |
T |
|
| Q |
108 |
gatgttcaaatatgattgctctttgcacattcacacatagggcgaggtactattgctaccaaagggagatggcgtctgtgttgaaacacggagcaaatat |
207 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
15506070 |
gatgttcaaatatgattgctctttgcagattcacacacagggcgaggtactattgctaccaaagggagacggcgtctgtgttgaaacacggagcaaatat |
15505971 |
T |
|
| Q |
208 |
gttagattttgttttcggaatttggtttacagaggtgaattgtcgggtaagagttgttgtgttcttggatctgattcagataagactttggtgtttaaat |
307 |
Q |
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||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15505970 |
gttagattttgtttttggaatttggtttacaaaggtgaattgtcgggtaagagttgttgtgttcttggatctgattcagataagactttggtgtttaaat |
15505871 |
T |
|
| Q |
308 |
tgatcttgcatacacgttcaattttaagaaaaatagaaaagggttgttaattgaccgatacttgaaagaaagtcacataagtatcgttcaagacttcttt |
407 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
15505870 |
tgatcttgcatacacgttcaattttaag-aaaatagaaaagggttgttaattgaccgatacttgaaagaaagtcacataaatatcgttcaagacttcttt |
15505772 |
T |
|
| Q |
408 |
cgcttgcgcatgctagcctttgcctatcttatattctccgatagtaggatttcatatacaattttaaattcattgtagtgaaagcctttatatagacaaa |
507 |
Q |
| |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15505771 |
tgcttgcgcatgctagcctttgcttatcttatattctccgatagtaggatttcatatacaattttaaattcattgtagtgaaagcctttatatagacaaa |
15505672 |
T |
|
| Q |
508 |
gaatgtcattaacaccagcggaacccaaaacccaattgcaaaaaggaataatattggcattttcataatcctcttgagtaaaaacaggggcaaagcaaaa |
607 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
15505671 |
gaatgtcattaacactagcggaacccaaaacccaattgcaaaaaggaataatattggcattttcatcatcctcttgagtaaaaacaggggcaaagcaaaa |
15505572 |
T |
|
| Q |
608 |
gaatttaagttaaggagactgagacagagaacattttttataacgaataaggtacataatttgatt-nnnnnnnttaaatacaaaagatatataagaacc |
706 |
Q |
| |
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| || ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
15505571 |
aatttaaagttaaggagactgagacagagaacattttttttaacgaataaggtacataatttgattaaaaaaaattaaatacaaaagatatataagaacc |
15505472 |
T |
|
| Q |
707 |
ctgagctaannnnnnnnnnnnnnnncaaataaaaaatagtagtgcatatattctagggttaaatattcctnnnnnnnntgttc-taggattaaatatatt |
805 |
Q |
| |
|
||||||||| ||||||||||||| ||||||||||||| |||| |||||||||||| ||||| |||||||||||||||| |
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|
| T |
15505471 |
ctgagctaatattttttttgtttttcaaataaaaaatattagtgcatatattgtaggattaaatattcctaaaataaatgttcttaggattaaatatatt |
15505372 |
T |
|
| Q |
806 |
tttagcaaatgatgaattcctt |
827 |
Q |
| |
|
|||||||||||||||||||||| |
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|
| T |
15505371 |
tttagcaaatgatgaattcctt |
15505350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 93; E-Value: 1e-44
Query Start/End: Original strand, 865 - 972
Target Start/End: Complemental strand, 15505352 - 15505245
Alignment:
| Q |
865 |
cttctaggtatatgacgatggattcttgttgtattcactacaattgtgattgtgac-agaatctatttgttcaacccgtgcatctcatgagggagaacgt |
963 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
15505352 |
cttctaggtatatgacgatggattcttgttgtattcactacaattgtgattgtgacaagaatctatttgttcaacccgtgcatctcatgagggag-acgt |
15505254 |
T |
|
| Q |
964 |
tccaatttg |
972 |
Q |
| |
|
||||||||| |
|
|
| T |
15505253 |
tccaatttg |
15505245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 78 - 128
Target Start/End: Complemental strand, 35554438 - 35554388
Alignment:
| Q |
78 |
ataggttgtcacataaattgtcaaaattttgatgttcaaatatgattgctc |
128 |
Q |
| |
|
|||| ||||||||||||||||| |||||||||||||||||||| ||||||| |
|
|
| T |
35554438 |
atagattgtcacataaattgtcgaaattttgatgttcaaatatcattgctc |
35554388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 1015 - 1044
Target Start/End: Complemental strand, 15505226 - 15505197
Alignment:
| Q |
1015 |
gttaatatcaacaaacgtattaatgtcatt |
1044 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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|
| T |
15505226 |
gttaatatcaacaaacgtattaatgtcatt |
15505197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 82 - 120
Target Start/End: Original strand, 13702363 - 13702401
Alignment:
| Q |
82 |
gttgtcacataaattgtcaaaattttgatgttcaaatat |
120 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||| |
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|
| T |
13702363 |
gttgtcacataagttgtcaaaattttgatgttcaaatat |
13702401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000003; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 78 - 113
Target Start/End: Complemental strand, 32692661 - 32692626
Alignment:
| Q |
78 |
ataggttgtcacataaattgtcaaaattttgatgtt |
113 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||| |
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|
| T |
32692661 |
ataggttgtcacataaattatcaaaattttgatgtt |
32692626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 83 - 120
Target Start/End: Original strand, 32692749 - 32692786
Alignment:
| Q |
83 |
ttgtcacataaattgtcaaaattttgatgttcaaatat |
120 |
Q |
| |
|
|||||| |||||||||||||||||| |||||||||||| |
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|
| T |
32692749 |
ttgtcatataaattgtcaaaattttaatgttcaaatat |
32692786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 78 - 115
Target Start/End: Original strand, 37814838 - 37814875
Alignment:
| Q |
78 |
ataggttgtcacataaattgtcaaaattttgatgttca |
115 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||| |
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|
| T |
37814838 |
ataggttgtcacataaattagcaaaattttgatgttca |
37814875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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