View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4606-Insertion-10 (Length: 546)

Name: NF4606-Insertion-10
Description: NF4606
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4606-Insertion-10
NF4606-Insertion-10
[»] chr5 (3 HSPs)
chr5 (187-546)||(1589435-1589801)
chr5 (326-490)||(24887349-24887513)
chr5 (422-491)||(26266801-26266870)
[»] chr3 (6 HSPs)
chr3 (10-140)||(19267469-19267598)
chr3 (361-491)||(8890855-8890985)
chr3 (412-491)||(11271753-11271832)
chr3 (389-491)||(31139053-31139154)
chr3 (412-493)||(12881722-12881803)
chr3 (361-455)||(4285255-4285350)
[»] scaffold0003 (1 HSPs)
scaffold0003 (286-478)||(356333-356533)
[»] chr7 (2 HSPs)
chr7 (328-478)||(23395226-23395376)
chr7 (420-491)||(9046550-9046621)
[»] chr8 (3 HSPs)
chr8 (192-430)||(45503319-45503552)
chr8 (402-546)||(27933480-27933624)
chr8 (412-491)||(33168007-33168086)
[»] chr1 (4 HSPs)
chr1 (354-491)||(12789064-12789207)
chr1 (361-437)||(14601132-14601208)
chr1 (362-491)||(45963028-45963157)
chr1 (422-503)||(12726749-12726831)
[»] chr4 (3 HSPs)
chr4 (361-491)||(8898867-8898997)
chr4 (442-491)||(36614544-36614593)
chr4 (444-491)||(7169190-7169238)
[»] chr2 (3 HSPs)
chr2 (412-491)||(24184979-24185058)
chr2 (424-491)||(16918133-16918200)
chr2 (444-493)||(35406868-35406917)
[»] scaffold0007 (1 HSPs)
scaffold0007 (406-488)||(215461-215543)
[»] chr6 (2 HSPs)
chr6 (446-491)||(31817509-31817554)
chr6 (282-322)||(20081763-20081803)


Alignment Details
Target: chr5 (Bit Score: 197; Significance: 1e-107; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 187 - 546
Target Start/End: Original strand, 1589435 - 1589801
Alignment:
Q  187 tgtatggttcttttgagtagtaaaaagagtatcaatccatagagttttacatttgattaccaatctatttttcagttttagttagcttaaaaagaataag 286  Q
    ||||||||||| | ||||  ||||||||| ||||||||||||||  ||  || ||||||||||||||||| ||| ||||||||||||||||| |||||||    
T  1589435 tgtatggttctatcgagt--taaaaagaggatcaatccatagagagttttatgtgattaccaatctatttctcacttttagttagcttaaaaggaataag 1589532  T
Q  287 tttgtttgttttaaaattcagatgtttaaaaagcgtcatgg--------tttttatctcaatgtttaatctaatgcattacatatctatttctctattct 378  Q
    |||||||| ||||||||||| ||||||||||||| ||||||        |||| |||||||||||||||||||| |||| | ||||||||||||||||||    
T  1589533 tttgtttggtttaaaattcaaatgtttaaaaagcatcatggaattgaggttttcatctcaatgtttaatctaatacattccctatctatttctctattct 1589632  T
Q  379 ataatgaaatatttctaaggacaaaacattcaattggtatatcatgtttcctctcataatgcataaatgtatctcaacaataatcaagtttattctcatg 478  Q
    |||||||||| |||||| ||||||| |||||||||||||||||||||||||||||||||| ||| || |||||||||||||||||||||||||| |||||    
T  1589633 ataatgaaatgtttctatggacaaagcattcaattggtatatcatgtttcctctcataatacatgaacgtatctcaacaataatcaagtttattttcatg 1589732  T
Q  479 attgattatcatt-aaaacctttgaacacaacctattgtgccaaaagcaatcacacctatctttgcaga 546  Q
     |||||||||||| | | ||||||| ||||||||||||| ||||||||||||| |||||||||||||||    
T  1589733 gttgattatcattgagaccctttgagcacaacctattgtcccaaaagcaatcaaacctatctttgcaga 1589801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 326 - 490
Target Start/End: Complemental strand, 24887513 - 24887349
Alignment:
Q  326 ggtttttatctcaatgtttaatctaatgcattacatatctatttctctattctataatgaaatatttctaaggacaaaacattcaattggtatatcatgt 425  Q
    |||||| |||| ||||||||||||| | ||||    |||||||||| |||||| |||| ||||||||||||||||| | |||||||||||||||||||||    
T  24887513 ggttttcatctgaatgtttaatctattacattctcaatctatttctttattctgtaattaaatatttctaaggacatagcattcaattggtatatcatgt 24887414  T
Q  426 ttcctctcataatgcataaatgtatctcaacaataatcaagtttattctcatgattgattatcat 490  Q
    ||||||| | ||| ||| ||  | |||||||||||||||| | |||||||||| ||| |||||||    
T  24887413 ttcctcttagaatacatgaacatttctcaacaataatcaaatctattctcatggttggttatcat 24887349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 422 - 491
Target Start/End: Complemental strand, 26266870 - 26266801
Alignment:
Q  422 atgtttcctctcataatgcataaatgtatctcaacaataatcaagtttattctcatgattgattatcatt 491  Q
    ||||||||| | | ||| |||||||||||||||| |||||||||||||||||||||| ||||||||||||    
T  26266870 atgtttcctttgagaatacataaatgtatctcaataataatcaagtttattctcatggttgattatcatt 26266801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 99; Significance: 1e-48; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 10 - 140
Target Start/End: Complemental strand, 19267598 - 19267469
Alignment:
Q  10 aagtgcttcttttctcgtctttctttcatagatattcactggtccaggaggatgatgaagtttatgtgtgttaatggaaggattttgagccttcacttca 109  Q
    |||||||||||| ||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||    
T  19267598 aagtgcttcttt-ctcgtctttctttcagagatattcgctggtccaggaggatgatgaagtttatgtgtgttaatggaaggattttgagactttacttca 19267500  T
Q  110 gccattattttcacaatgacttcctctaaag 140  Q
    ||||||| |||| ||||||||||||||||||    
T  19267499 gccattaatttcccaatgacttcctctaaag 19267469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 361 - 491
Target Start/End: Complemental strand, 8890985 - 8890855
Alignment:
Q  361 tatctatttctctattctataatgaaat-atttctaaggacaaaacattcaattggtatatcatgtttcctctcataatgcataaatgtatctcaacaat 459  Q
    |||||||||||||||| ||||||||| | ||||||||||||||    |||  ||||||  ||||||||||||||||||| ||| ||||||||||||||||    
T  8890985 tatctatttctctattttataatgaattcatttctaaggacaacgtgttct-ttggtaattcatgtttcctctcataattcatgaatgtatctcaacaat 8890887  T
Q  460 aatcaagtttattctcatgattgattatcatt 491  Q
    ||  |||  |||||||||| ||||||||||||    
T  8890886 aactaagcctattctcatggttgattatcatt 8890855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 412 - 491
Target Start/End: Complemental strand, 11271832 - 11271753
Alignment:
Q  412 ttggtatatcatgtttcctctcataatgcataaatgtatctcaacaataatcaagtttattctcatgattgattatcatt 491  Q
    ||||||| | ||||||||| | | |||  ||||||||||||||| |||||||||| ||||||||||| ||||||||||||    
T  11271832 ttggtattttatgtttccttttagaatatataaatgtatctcaataataatcaagcttattctcatggttgattatcatt 11271753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 389 - 491
Target Start/End: Original strand, 31139053 - 31139154
Alignment:
Q  389 atttctaaggacaaaacattcaattggtatatcatgtttcctctcataatgcataaatgtatctcaacaataatcaagtttattctcatgattgattatc 488  Q
    ||||||||||||||||  |||  ||||||| | |||||| || ||||||| |||||| ||||||||| |||||||||| ||||||||||  ||||||| |    
T  31139053 atttctaaggacaaaatgttc-tttggtattttatgttttctttcataatacataaacgtatctcaataataatcaagcttattctcatagttgattacc 31139151  T
Q  489 att 491  Q
    |||    
T  31139152 att 31139154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 412 - 493
Target Start/End: Complemental strand, 12881803 - 12881722
Alignment:
Q  412 ttggtatatcatgtttcctctcataatgcataaatgtatctcaacaataatcaagtttattctcatgattgattatcattaa 493  Q
    ||||||| ||||||||||||||| ||| ||| |||||||||||| ||||| |||| |||||||  || || |||||||||||    
T  12881803 ttggtatttcatgtttcctctcaaaatacatgaatgtatctcaataataaccaagcttattcttttggttaattatcattaa 12881722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 361 - 455
Target Start/End: Complemental strand, 4285350 - 4285255
Alignment:
Q  361 tatctatttctctattctataatgaaat-atttctaaggacaaaacattcaattggtatatcatgtttcctctcataatgcataaatgtatctcaa 455  Q
    ||||||||||| |||||||||||||| | ||||||||| ||||    |||| ||| ||| ||||||||||||||  ||| ||| ||||||||||||    
T  4285350 tatctatttctttattctataatgaattaatttctaagtacaaggagttcatttgatatttcatgtttcctctcgaaatacatgaatgtatctcaa 4285255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 88; Significance: 5e-42; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 286 - 478
Target Start/End: Original strand, 356333 - 356533
Alignment:
Q  286 gtttgtttgttttaaaattcagatgtttaaaaagcgtcatgg--------tttttatctcaatgtttaatctaatgcattacatatctatttctctattc 377  Q
    ||||||||| ||||||||||||||||||||||||| ||||||        |||| |||||||||||||||| | | |||| | ||| |||||||||||||    
T  356333 gtttgtttggtttaaaattcagatgtttaaaaagcatcatgggattgaggttttcatctcaatgtttaatccattacattccttatgtatttctctattc 356432  T
Q  378 tataatgaaatatttctaaggacaaaacattcaattggtatatcatgtttcctctcataatgcataaatgtatctcaacaataatcaagtttattctcat 477  Q
    ||||||||||| ||||||||||||| |||||||||||| ||| |||||||||||||||||| ||| || |||||||    |||||||||| |||||||||    
T  356433 tataatgaaatgtttctaaggacaagacattcaattggcataccatgtttcctctcataatacatgaacgtatctcggttataatcaagtctattctcat 356532  T
Q  478 g 478  Q
    |    
T  356533 g 356533  T

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Target: chr7 (Bit Score: 71; Significance: 7e-32; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 328 - 478
Target Start/End: Complemental strand, 23395376 - 23395226
Alignment:
Q  328 tttttatctcaatgtttaatctaatgcattacatatctatttctctattctataatgaaatatttctaaggacaaaacattcaattggtatatcatgttt 427  Q
    |||| |||| ||||||||||| | | |||| | ||||||||||||||||| ||||||||||| |||||||||||| ||||||||||| ||||| ||||||    
T  23395376 ttttcatcttaatgtttaatccattacatttcctatctatttctctattcaataatgaaatagttctaaggacaagacattcaattgatatattatgttt 23395277  T
Q  428 cctctcataatgcataaatgtatctcaacaataatcaagtttattctcatg 478  Q
    ||||||  ||| ||| || | |||| ||||||||| |||||||||||||||    
T  23395276 cctctccgaatacatgaacgcatcttaacaataatgaagtttattctcatg 23395226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 420 - 491
Target Start/End: Complemental strand, 9046621 - 9046550
Alignment:
Q  420 tcatgtttcctctcataatgcataaatgtatctcaacaataatcaagtttattctcatgattgattatcatt 491  Q
    ||||||||||| ||| ||| ||| ||||||||||||  ||||||||| ||||||||||||||||||||||||    
T  9046621 tcatgtttcctttcagaatacatgaatgtatctcaatgataatcaagcttattctcatgattgattatcatt 9046550  T

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Target: chr8 (Bit Score: 68; Significance: 4e-30; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 192 - 430
Target Start/End: Original strand, 45503319 - 45503552
Alignment:
Q  192 ggttcttttgagtagtaaaaagagtatcaatccatagagttttacatttgattaccaatctatttt-tcagttttagttagcttaaaaagaataagtttg 290  Q
    |||||| | ||||||||||||||||||| ||| |||||||||||  |  |||||  |||||| ||| | | ||||  |||||| |||| ||||| |||||    
T  45503319 ggttctatcgagtagtaaaaagagtatcgatctatagagttttaagt--gattataaatctaatttctgattttttattagctgaaaaggaataggtttg 45503416  T
Q  291 tttgttttaaaattcagatgtttaaaaagcgtcatggtttttatctcaatgtttaatctaatgcattacatatctatttctctattctataatgaaatat 390  Q
    |||| ||||||||||| |||||| |||    |   |||||| | |||||||||||||||| ||||||   |||||||||| ||||||||||||||||| |    
T  45503417 tttggtttaaaattcaaatgtttgaaa----ttgaggttttcacctcaatgtttaatctattgcattctttatctatttccctattctataatgaaatgt 45503512  T
Q  391 ttctaaggacaaaacattcaattggtatatcatgtttcct 430  Q
    ||||||| || | ||| |||||||||||||||||||||||    
T  45503513 ttctaagaactagacaatcaattggtatatcatgtttcct 45503552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 402 - 546
Target Start/End: Complemental strand, 27933624 - 27933480
Alignment:
Q  402 aaacattcaattggtatatcatgtttcctctcataatgcataaatgtatctcaacaataatcaagtttattctcatgattgattatcattaaaac-cttt 500  Q
    ||||||||||||||| | ||||||||||||| | ||| ||| ||  ||||||||||||||||| || |||||||||| |||   |||||| |||| ||||    
T  27933624 aaacattcaattggtctgtcatgtttcctctaagaatacatgaacatatctcaacaataatcacgtctattctcatggttg---atcattgaaactcttt 27933528  T
Q  501 gaacacaacc--tattgtgccaaaagcaatcacacctatctttgcaga 546  Q
    ||  ||||||  |||||| |||||| |||||| ||| |||||||||||    
T  27933527 gagtacaacctttattgtcccaaaaacaatcaaaccaatctttgcaga 27933480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 412 - 491
Target Start/End: Original strand, 33168007 - 33168086
Alignment:
Q  412 ttggtatatcatgtttcctctcataatgcataaatgtatctcaacaataatcaagtttattctcatgattgattatcatt 491  Q
    ||||||| ||||||||| ||||  ||| | | ||||||| ||||||||||||||| ||||| ||||| | ||||||||||    
T  33168007 ttggtatttcatgtttcatctcggaatacgtgaatgtatatcaacaataatcaagcttattttcatggtcgattatcatt 33168086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 9e-19; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 354 - 491
Target Start/End: Complemental strand, 12789207 - 12789064
Alignment:
Q  354 cattacatatctatttctctattctataatgaaatatttctaaggacaaaacattcaattggta------tatcatgtttcctctcataatgcataaatg 447  Q
    |||| ||||| |||| ||||||||||||||||||| |||||||||||||   ||||||||||||      ||||||||||||||||| |||  |  || |    
T  12789207 cattccatatttattcctctattctataatgaaatgtttctaaggacaaggaattcaattggtatattagtatcatgtttcctctcagaatatacgaacg 12789108  T
Q  448 tatctcaacaataatcaagtttattctcatgattgattatcatt 491  Q
    ||||||||||||||||| |  |||||||| | ||||||||||||    
T  12789107 tatctcaacaataatcatgcctattctcaaggttgattatcatt 12789064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 361 - 437
Target Start/End: Original strand, 14601132 - 14601208
Alignment:
Q  361 tatctatttctctattctataatgaaatatttctaaggacaaaacattcaattggtatatcatgtttcctctcataa 437  Q
    |||||||||||||||||||||||||||| |||| ||||||||  |||||||||||||| || |||||||||| ||||    
T  14601132 tatctatttctctattctataatgaaatttttccaaggacaatgcattcaattggtatttcttgtttcctcttataa 14601208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 362 - 491
Target Start/End: Complemental strand, 45963157 - 45963028
Alignment:
Q  362 atctatttctctattctataatgaaat-atttctaaggacaaaacattcaattggtatatcatgtttcctctcataatgcataaatgtatctcaacaata 460  Q
    ||||||||||||||| ||||||||| | ||| ||||||||||    |||  ||||||| ||||||||| ||||| ||| ||| |||||||||||||||||    
T  45963157 atctatttctctattttataatgaatttattcctaaggacaaggtgttct-ttggtatttcatgtttcatctcaaaatacatgaatgtatctcaacaata 45963059  T
Q  461 atcaagtttattctcatgattgattatcatt 491  Q
    |||||| |||| |||||| || |||||||||    
T  45963058 atcaagcttatcctcatggtttattatcatt 45963028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 422 - 503
Target Start/End: Original strand, 12726749 - 12726831
Alignment:
Q  422 atgtttcctctcataatgcataaatgtatctcaacaataatcaag-tttattctcatgattgattatcattaaaacctttgaa 503  Q
    ||||||||| ||| |||  ||||||||||||||| || || |||| |||||||||||| |||||||| ||| | |||||||||    
T  12726749 atgtttcctttcagaatatataaatgtatctcaataacaaccaagctttattctcatggttgattattattgagacctttgaa 12726831  T

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Target: chr4 (Bit Score: 48; Significance: 4e-18; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 361 - 491
Target Start/End: Complemental strand, 8898997 - 8898867
Alignment:
Q  361 tatctatttctctattctataatgaaat-atttctaaggacaaaacattcaattggtatatcatgtttcctctcataatgcataaatgtatctcaacaat 459  Q
    |||||||||||||||| ||||||||| | |||||||||||||| | ||||  ||||||| |||| |||||||||  ||| ||| ||||||||||||||||    
T  8898997 tatctatttctctattttataatgaattcatttctaaggacaatatattct-ttggtatttcatatttcctctcccaatacatgaatgtatctcaacaat 8898899  T
Q  460 aatcaagtttattctcatgattgattatcatt 491  Q
    ||||||   ||||||| || | ||||||||||    
T  8898898 aatcaacactattctcttggtcgattatcatt 8898867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 442 - 491
Target Start/End: Original strand, 36614544 - 36614593
Alignment:
Q  442 taaatgtatctcaacaataatcaagtttattctcatgattgattatcatt 491  Q
    |||| ||||||||| ||||||||||| |||||||||| ||||||||||||    
T  36614544 taaacgtatctcaataataatcaagtatattctcatggttgattatcatt 36614593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 444 - 491
Target Start/End: Complemental strand, 7169238 - 7169190
Alignment:
Q  444 aatgtatctcaa-caataatcaagtttattctcatgattgattatcatt 491  Q
    |||||||||||| ||||||||||  ||||||||||||||||||||||||    
T  7169238 aatgtatctcaaacaataatcaaacttattctcatgattgattatcatt 7169190  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 412 - 491
Target Start/End: Original strand, 24184979 - 24185058
Alignment:
Q  412 ttggtatatcatgtttcctctcataatgcataaatgtatctcaacaataatcaagtttattctcatgattgattatcatt 491  Q
    ||||||| |||| ||||| |||| ||| ||| ||| |||||||||||||||||||  |||||||||| ||||||||||||    
T  24184979 ttggtatttcatatttccactcagaatacatgaatatatctcaacaataatcaagcctattctcatggttgattatcatt 24185058  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 424 - 491
Target Start/End: Complemental strand, 16918200 - 16918133
Alignment:
Q  424 gtttcctctcataatgcataaatgtatctcaacaataatcaagtttattctcatgattgattatcatt 491  Q
    ||||||| ||| ||| |||||||||||||||| |||||||||   |||||||||| ||| ||||||||    
T  16918200 gtttcctttcaaaatacataaatgtatctcaataataatcaaacatattctcatggttggttatcatt 16918133  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 444 - 493
Target Start/End: Complemental strand, 35406917 - 35406868
Alignment:
Q  444 aatgtatctcaacaataatcaagtttattctcatgattgattatcattaa 493  Q
    ||||||||||||  |||||||||  |||||||||| ||||||||||||||    
T  35406917 aatgtatctcaatgataatcaagcatattctcatggttgattatcattaa 35406868  T

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Target: scaffold0007 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 406 - 488
Target Start/End: Complemental strand, 215543 - 215461
Alignment:
Q  406 attcaattggtatatcatgtttcctctcataatgcataaatgtatctcaacaataatcaagtttattctcatgattgattatc 488  Q
    ||||| |||||||| |||||||||||||  ||| ||| || ||||||||||||| |||| |  |||||||||| |||| ||||    
T  215543 attcagttggtataacatgtttcctctcggaatacatgaacgtatctcaacaatcatcacgcctattctcatggttgaatatc 215461  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 446 - 491
Target Start/End: Original strand, 31817509 - 31817554
Alignment:
Q  446 tgtatctcaacaataatcaagtttattctcatgattgattatcatt 491  Q
    |||||||||| ||||||||||  |||||||||| ||||||||||||    
T  31817509 tgtatctcaataataatcaagcctattctcatggttgattatcatt 31817554  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 282 - 322
Target Start/End: Original strand, 20081763 - 20081803
Alignment:
Q  282 ataagtttgtttgttttaaaattcagatgtttaaaaagcgt 322  Q
    ||||||||||||| ||||||||||| |||||||||| ||||    
T  20081763 ataagtttgtttggtttaaaattcaaatgtttaaaaggcgt 20081803  T

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