View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4606-Insertion-11 (Length: 543)
Name: NF4606-Insertion-11
Description: NF4606
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4606-Insertion-11 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 328; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 192 - 543
Target Start/End: Original strand, 2689815 - 2690166
Alignment:
| Q |
192 |
atgtcactattttgatgaaaactgtgagcgctgcaacgggagtttcgtgaacttgaatttgcagaaaatggagaataaattctgagccatatatttcttt |
291 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2689815 |
atgtcactattttgatgaaaactgtgagcgatgcaacgggagtttcgtgaacttgaatttgcagaaaatggagaataaattctgagccatatatttcttt |
2689914 |
T |
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| Q |
292 |
caggttctatcaattttgtctcttggtgcaattctaatgctcggtttacttgtgaatgtggtatatgctttatttgataataattgaatttatacgagac |
391 |
Q |
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| T |
2689915 |
caggttctatcaattttgtctcttggtgcaattctaatgctaggtttacttgtgaatatggtatatgctttatttgataataattgaatttatatgagac |
2690014 |
T |
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| Q |
392 |
ttttgattgatttttcagcttcctaatggtcttaaaatttatacaatgaatctgaaatatgtgcacttattgaatggttaattaaactagatgatactag |
491 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| || |
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| T |
2690015 |
ttttgattgatttttcagcttcctaatggtcttaaaatttatacaatgaatctgaaatatgtgcacttattgcatggttaattaaactagatgataccag |
2690114 |
T |
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| Q |
492 |
tccaagtttctgatcttgagatttatttgaatcaacacttgcatataaccta |
543 |
Q |
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| T |
2690115 |
tccaagtttctgatcttgagatttatttgaatcaacacttgcatataaccta |
2690166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 26 - 197
Target Start/End: Original strand, 2689557 - 2689728
Alignment:
| Q |
26 |
tatagcctcggtttaattaaagctatgaaggactacaagccttgggaatatgagcaaacttctttcgtattaagtggtttctctctcgttgttttcacgg |
125 |
Q |
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| T |
2689557 |
tatagcctcggtttaattaaagctatgaaggactacaagccttgggaatatgagcaaacttctttcgtattaagtggtttctctctcgttgttttcacgg |
2689656 |
T |
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| Q |
126 |
atactaatagtaggggatagacatgtttgtgtgctgaagaagccaggatttgcaccaccgaatgctatgtca |
197 |
Q |
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| T |
2689657 |
atactaatagtaggggatagacatgtttatgtgctgaagaagccaggatttgcaccacccgctgctatgtca |
2689728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 188; Significance: 1e-101; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 312 - 539
Target Start/End: Complemental strand, 31209484 - 31209257
Alignment:
| Q |
312 |
tcttggtgcaattctaatgctcggtttacttgtgaatgtggtatatgctttatttgataataattgaatttatacgagacttttgattgatttttcagct |
411 |
Q |
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||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| |
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| T |
31209484 |
tcttggtgcaattctaatgctaggtttacttgtgaatatggtatatgctttatttgataataattgaatttatatgagaattttgattgatttttcagct |
31209385 |
T |
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| Q |
412 |
tcctaatggtcttaaaatttatacaatgaatctgaaatatgtgcacttattgaatggttaattaaactagatgatactagtccaagtttctgatcttgag |
511 |
Q |
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| T |
31209384 |
tcctaatggttttataatttatacaatgaaactgaaatatgtgcacttattgaatggttaattaatctagatgatactcgtccaagtttccgatcttgag |
31209285 |
T |
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| Q |
512 |
atttatttgaatcaacacttgcatataa |
539 |
Q |
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| T |
31209284 |
atttatttgaatcaacacttgcatataa |
31209257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 196 - 313
Target Start/End: Complemental strand, 31209715 - 31209598
Alignment:
| Q |
196 |
cactattttgatgaaaactgtgagcgctgcaacgggagtttcgtgaacttgaatttgcagaaaatggagaataaattctgagccatatatttctttcagg |
295 |
Q |
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|||||||||||||||||||||||||| |||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
31209715 |
cactattttgatgaaaactgtgagcgatgcaacaggagtttggtgaacttgaatttgcagaaaatggagaataaattctgagccatatatttctctcagg |
31209616 |
T |
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| Q |
296 |
ttctatcaattttgtctc |
313 |
Q |
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| T |
31209615 |
ttctatcaattttgtctc |
31209598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 231 - 307
Target Start/End: Complemental strand, 25641126 - 25641048
Alignment:
| Q |
231 |
gagtttcgtgaacttgaatttgcagaaaatggagaataaattctg--agccatatatttctttcaggttctatcaattt |
307 |
Q |
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|||||| ||||||| || |||| ||||||||||||||||||||| |||||||||| || |||||||||||| |||| |
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| T |
25641126 |
gagtttagtgaactcgattttgtggaaaatggagaataaattctgaaagccatatatgcctctcaggttctatctattt |
25641048 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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